View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10543_4 (Length: 424)
Name: NF10543_4
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10543_4 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 26 - 395
Target Start/End: Complemental strand, 46629739 - 46629362
Alignment:
| Q |
26 |
atcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttc |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629739 |
atcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttc |
46629640 |
T |
|
| Q |
126 |
ttgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629639 |
ttgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacg |
46629540 |
T |
|
| Q |
226 |
actttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgatatatataaagaaaaaaggcactgatacgggcataaatgttcaaat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629539 |
actttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgatatatataaagaaaaaaggcactgatacgggcataaatgttcaaat |
46629440 |
T |
|
| Q |
326 |
a--------atgttacaatcaaatgataattcaatcagctactccattgtaattaccattggaatatacatatgaagt |
395 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46629439 |
aaatgttgtatgttacaatcaaatgataattcaatcagctactccattataattaccattggaatatacatatgaagt |
46629362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 46637553 - 46637303
Alignment:
| Q |
34 |
gtccaagagaagacaaagatttgcaagttggtgctgaaaacg-tccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgttac |
132 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| ||||| | | || || |||||||||||| | ||||||||||| ||||||||||||| |||| |
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| T |
46637553 |
gtccaagagaagacaaagatttgcaagctggtgctggaaacgcttcaac-gtccttcccaggttccatgccaagcctagtgaggtctcccttctccttac |
46637455 |
T |
|
| Q |
133 |
caatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgactttga |
232 |
Q |
| |
|
|||| ||||| ||||||||||| ||| | ||||||||||||||||||| |||||||||| | |||||||||| ||| ||||||||||||||||||||| |
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| T |
46637454 |
caatacctacagcttccacaagtacgccaagtccaacagtagacttcaaaaaagatatgtaatcttctagagaagttccgccctccataaacgactttga |
46637355 |
T |
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| Q |
233 |
aatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgatatatata |
287 |
Q |
| |
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||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |
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| T |
46637354 |
aatctgtgtat---aaatataagcaaagtgaggactgaaacaaattatatatata |
46637303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 46618854 - 46618596
Alignment:
| Q |
27 |
tcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtccgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttct |
126 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||| ||| |||| || || |||||||||||| | |||| |||||||||||||||| ||| |
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| T |
46618854 |
tcactaggtccaagagaagacaaagctttgcaagctggtactggcaacgcttgaacgtccttcccaggttccatgccaatcctagtaaggtctcccatct |
46618755 |
T |
|
| Q |
127 |
tgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacga |
226 |
Q |
| |
|
|||||||| ||||| ||||||||||| || | ||||||||||||||||||||||||| |||| | |||||||||| |||| |||||||||||||| |
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| T |
46618754 |
ccttaccaatacctacagcttccacaagtacaccaagtccaacagtagacttcaaagaagatgtgtaatcttctagagaagttcttccctccataaacga |
46618655 |
T |
|
| Q |
227 |
ctttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatgatatatataa |
288 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||||| |
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|
| T |
46618654 |
ctttgaaatctgtgtat---aaatataagtaaagtgaggactgaaacatatgatatatataa |
46618596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 46643245 - 46643439
Alignment:
| Q |
26 |
atcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtcc---gactgttcttcccaggttcgacaccaagcctagtaaggtctccc |
122 |
Q |
| |
|
|||||| ||||||| |||||||| || |||||||||| |||||||||| | || |||||||||||| |||||| || |||||||||||||||||||| |
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|
| T |
46643245 |
atcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctccc |
46643344 |
T |
|
| Q |
123 |
ttcttgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctc |
217 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||| | |||| |||||||||||||| |||||||||||| |||||||||| |||| ||||| |
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|
| T |
46643345 |
ttctccttaccaatactaactgcttccacaagaacgccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctc |
46643439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 279
Target Start/End: Original strand, 46176604 - 46176773
Alignment:
| Q |
107 |
cctagtaaggtctcccttcttgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaa |
206 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||| || | ||||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
46176604 |
cctagtaaggtctttcttctccttaccaatacctactgcttccacaaggacaccaagtccaacaatagacttcaaagaagatatgtattcttcaagagaa |
46176703 |
T |
|
| Q |
207 |
attctgccctccataaacgactttgaaatctgtgtataacaaatacaagcaaagtgaggacagaaacaaatga |
279 |
Q |
| |
|
||||| |||||| ||| ||||| || | ||| |||||| | ||||| |||||||||||| ||| ||||||| |
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| T |
46176704 |
gttctgtcctccacaaatgacttagacacctgagtataa-atataca--caaagtgaggactgaagcaaatga |
46176773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 15769668 - 15769882
Alignment:
| Q |
34 |
gtccaagagaagacaaagatttgcaagttggtgctgaaaacgtc---cgactgttcttcccaggttcgacaccaagcctagtaaggtctcccttcttgtt |
130 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||| || |
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| T |
15769668 |
gtccaagagaagacaaagctttgcaagttggtgctaaaaacgccttacgactgttcttcacaggctcgacaccaagcctagtaaggtctcccttctcctt |
15769767 |
T |
|
| Q |
131 |
accaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctccataaacgacttt |
230 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||| | | ||||| |
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|
| T |
15769768 |
accaatacctactgcttccacaagaacaccaactccaacaatagacttcaaagaagatatgtattcttctagagaagttcttccctccacatatgactta |
15769867 |
T |
|
| Q |
231 |
gaaatctgtgtataa |
245 |
Q |
| |
|
|||| ||| |||||| |
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|
| T |
15769868 |
gaaacctgagtataa |
15769882 |
T |
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