View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10543_5 (Length: 395)
Name: NF10543_5
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10543_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 49978671 - 49979042
Alignment:
| Q |
11 |
cataggagatggacatcatcacccaacaatgccattgagtttcccaacatccttctctgctgcaggttcatcatcctcaacatctcaagttcaacaatat |
110 |
Q |
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| T |
49978671 |
cataggagatcatcatcatcacccaacaatgccattgagtttcccaacatccttctctgctgcaggttcatcatcctcaacatctcaagttcaacaatat |
49978770 |
T |
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| Q |
111 |
ctgtactcttcaccatcaaggcctatgtctttccctccacatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggcagcaat |
210 |
Q |
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| T |
49978771 |
ctgtactcttcaccatcaaggcctatgtctttccctccacatttggttcctcacgattaccgtcatgtgagtcatatgatgagtaacaatgggcagcaat |
49978870 |
T |
|
| Q |
211 |
atgtggcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgatttcaaga |
310 |
Q |
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| T |
49978871 |
atgtggcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggttttccagatcatcatccttcaacgatcaatcgatttcaaga |
49978970 |
T |
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| Q |
311 |
tggtatgtaatggagtgatattttgttatcataaagacacgctagctatctgtaatgtatgtatgtatatcc |
382 |
Q |
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| T |
49978971 |
tggtatgtaatggagtgatattttgttatcataaagacacgctagctatctgtaatgtatgtatgtatatcc |
49979042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 49952178 - 49952122
Alignment:
| Q |
216 |
gcaggtggaggtgagtcaagttacacgtgcataggtgcaccggttggacaaggtttt |
272 |
Q |
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| T |
49952178 |
gcaggtggtggtgagtcaagttacacttgcataggtgcaccggttagacaaggtttt |
49952122 |
T |
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