View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10543_6 (Length: 394)

Name: NF10543_6
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10543_6
NF10543_6
[»] chr4 (22 HSPs)
chr4 (26-366)||(644724-645064)
chr4 (38-366)||(553384-553713)
chr4 (169-345)||(1600456-1600632)
chr4 (54-311)||(53761692-53761947)
chr4 (36-227)||(12121461-12121653)
chr4 (263-366)||(1524351-1524454)
chr4 (81-320)||(3438477-3438716)
chr4 (38-320)||(55908639-55908922)
chr4 (187-320)||(6006382-6006516)
chr4 (36-101)||(1513535-1513600)
chr4 (166-227)||(8187095-8187156)
chr4 (173-229)||(570392-570448)
chr4 (26-227)||(8184034-8184236)
chr4 (30-85)||(570248-570303)
chr4 (180-227)||(1513411-1513458)
chr4 (39-101)||(546819-546881)
chr4 (173-227)||(1519146-1519200)
chr4 (173-227)||(1545814-1545868)
chr4 (187-283)||(1548371-1548468)
chr4 (44-101)||(55505236-55505293)
chr4 (258-318)||(566315-566375)
chr4 (36-88)||(1508147-1508199)
[»] chr6 (16 HSPs)
chr6 (26-366)||(11936140-11936481)
chr6 (26-366)||(11948120-11948461)
chr6 (187-312)||(6402915-6403040)
chr6 (263-366)||(28935189-28935292)
chr6 (45-101)||(6603333-6603389)
chr6 (173-229)||(12102307-12102363)
chr6 (38-91)||(28934954-28935007)
chr6 (45-312)||(6394776-6395044)
chr6 (166-242)||(6423251-6423327)
chr6 (45-227)||(6432073-6432256)
chr6 (50-312)||(6585156-6585419)
chr6 (187-364)||(7119212-7119386)
chr6 (187-364)||(7131690-7131864)
chr6 (181-229)||(9411404-9411452)
chr6 (45-93)||(10579876-10579924)
chr6 (45-101)||(14820605-14820661)
[»] chr8 (8 HSPs)
chr8 (26-366)||(28246160-28246499)
chr8 (45-227)||(27922420-27922603)
chr8 (37-223)||(34936171-34936358)
chr8 (173-227)||(21235599-21235653)
chr8 (51-227)||(17636405-17636581)
chr8 (141-276)||(18315228-18315364)
chr8 (121-227)||(32151289-32151396)
chr8 (30-85)||(21235455-21235510)
[»] chr3 (6 HSPs)
chr3 (24-366)||(1657142-1657481)
chr3 (45-312)||(51113700-51113968)
chr3 (48-252)||(51764419-51764624)
chr3 (39-184)||(514775-514921)
chr3 (44-91)||(51121034-51121081)
chr3 (173-283)||(51120841-51120951)
[»] chr5 (5 HSPs)
chr5 (72-312)||(41889473-41889714)
chr5 (45-320)||(32267387-32267660)
chr5 (45-316)||(41901453-41901722)
chr5 (47-92)||(20478222-20478267)
chr5 (173-225)||(38267562-38267614)
[»] chr2 (2 HSPs)
chr2 (38-320)||(1037575-1037858)
chr2 (37-301)||(45245015-45245280)
[»] chr7 (1 HSPs)
chr7 (266-318)||(7977712-7977764)
[»] chr1 (4 HSPs)
chr1 (37-101)||(29719054-29719118)
chr1 (48-101)||(19468630-19468683)
chr1 (197-253)||(19468477-19468533)
chr1 (37-101)||(29659027-29659091)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 26 - 366
Target Start/End: Original strand, 644724 - 645064
Alignment:
Q  26 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644724 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 644823  T
Q  126 tgcacaagcccgctgcaactctttgagatcaaagaaatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagtt 225  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644824 tgcacaagcccgctgcaactctttgagatcaaataaatgatttatcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagtt 644923  T
Q  226 caatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtct 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  644924 caatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaaccataccttcttcagatacgtct 645023  T
Q  326 ttgcaatggctcaaatcaagaagctgtaaatttgggaaaca 366  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  645024 ttgcaatggctcaaatcaagaagctgtaaatttgggaaaca 645064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 38 - 366
Target Start/End: Original strand, 553384 - 553713
Alignment:
Q  38 caaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccg 137  Q
    ||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || |||||| |   |||| |    |   ||||||||| ||||||     
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagccca 553483  T
Q  138 ctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagta 236  Q
       ||||||||||| |||| |  || || || ||| ||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||| |||    
T  553484 gaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgta 553583  T
Q  237 gcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtctttgcaatggct 336  Q
     ||||| |||||||||||| ||||| ||||||||||||||||||||| || || ||||||||||||||| | ||||||||||||| || | | |||  ||    
T  553584 acttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagatacatcgtaggaatatct 553683  T
Q  337 caaatcaagaagctgtaaatttgggaaaca 366  Q
    ||||||||| | ||| ||||| ||||||||    
T  553684 caaatcaagcatctgcaaattggggaaaca 553713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 345
Target Start/End: Original strand, 1600456 - 1600632
Alignment:
Q  169 atcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaa 268  Q
    ||||||||| |||||| |||||||||  ||||||||||||||  ||||||||||||||| |    | ||||||| | |||||||  | | ||| ||||||    
T  1600456 atcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaa 1600555  T
Q  269 tgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtctttgcaatggctcaaatcaag 345  Q
    |||||||| ||| ||||| || ||||||| |||  ||||||||||||||||| ||   |||||  ||||||||||||    
T  1600556 tgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaag 1600632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 311
Target Start/End: Complemental strand, 53761947 - 53761692
Alignment:
Q  54 agttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactctttgaga 153  Q
    ||||||||||| |||||  |||||||||||||||| || |||||||||   ||||||  ||| ||| | | ||||| |||||| |  ||| |||| ||||    
T  53761947 agttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgaga 53761849  T
Q  154 tcaaagaaatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacag 253  Q
    ||| |||  || |||||||| |||| | |||||||||||||  ||| |||| || ||||||||| ||||||||| |  || |||||||| |||||||||     
T  53761848 tcacagag-tgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacac 53761750  T
Q  254 cgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaatacctt 311  Q
       | ||| |||||||| |||||||||||| || || ||||||| |||  ||||||||    
T  53761749 tcggctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 12121653 - 12121461
Alignment:
Q  36 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcc 135  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||  |||| ||||||      ||  |||  ||||| ||||||| |||||    
T  12121653 ttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcc 12121554  T
Q  136 cgctgcaactctttgagatcaaaga-aatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    | | ||||| ||||||||| |  || | || || ||| |||||  ||||| |||||||||  ||||| || ||||||||||||||||||||||    
T  12121553 cacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 1524454 - 1524351
Alignment:
Q  263 ttcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtctttgcaatggctcaaatcaagaagctgtaaatttggga 362  Q
    |||||||| ||||  |||||| || || ||||||| |||| |||||||||||||||||||| |  |||||  || |||||||| ||||| ||||| ||||    
T  1524454 ttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagatacgtatgagcaataacttaaatcaagcagctgcaaattgggga 1524355  T
Q  363 aaca 366  Q
    ||||    
T  1524354 aaca 1524351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 320
Target Start/End: Complemental strand, 3438716 - 3438477
Alignment:
Q  81 ttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactctttgagatcaaagaaatgatttatcgtcaactct 180  Q
    |||||||| ||| | |||||||||| ||||||||  ||| ||||||||| |||||| |  |||||||||||||| | |   |  ||||||| ||||||||    
T  3438716 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtatttatcatcaactct 3438617  T
Q  181 tgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgtta 280  Q
    ||||  |||||||   || ||||||| ||| | ||| |||||||||| || |   |  |||| || | |||| | || ||| |||||||||||||| |||    
T  3438616 tgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatctta 3438517  T
Q  281 caaaatatcattaaaacatgaacaataccttcttcagata 320  Q
    ||| || || ||||||| |||| || |||||| |||||||    
T  3438516 caacatctccttaaaacttgaataacaccttcgtcagata 3438477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 320
Target Start/End: Complemental strand, 55908922 - 55908639
Alignment:
Q  38 caaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccg 137  Q
    ||||||||  ||||| ||||||||||| ||||| || ||||||||||| || ||||| |||||  | ||||||  ||  ||  ||||||| | ||||||     
T  55908922 caaatcgacttctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagccca 55908823  T
Q  138 ctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagta 236  Q
    |  ||| |||||||||||| | | | || || ||| ||||| | ||||  ||||||||  |||||||| | ||  ||||||| |||||| | | ||||||    
T  55908822 caacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagta 55908723  T
Q  237 gcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagata 320  Q
    | |||| ||||||||||   | |||||||||||||||||  |||||| || || ||| ||| | |  |||||||||||||||||    
T  55908722 gtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagata 55908639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 320
Target Start/End: Original strand, 6006382 - 6006516
Alignment:
Q  187 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacag-cgagttaaattcaaatgtctaatgttacaaaa 285  Q
    |||||||| ||||| ||||||  ||| ||||| |||||  | | |||||||||||||||||||||||  |  |||| |||||||||||||| |||| | |    
T  6006382 tgacaagtttaacatctccagcatggaaactttaaagtctattctaagtagcttcagtcttgaacagttggtttaagttcaaatgtctaatcttactaca 6006481  T
Q  286 tatcattaaaacatgaacaataccttcttcagata 320  Q
    | || ||||||| ||| ||| |||||| |||||||    
T  6006482 tttccttaaaacttgagcaacaccttcatcagata 6006516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 1513600 - 1513535
Alignment:
Q  36 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    ||||||| ||||||||||||||||||||||||||| | |||| | ||||||||  |||| ||||||    
T  1513600 ttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgaca 1513535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 8187156 - 8187095
Alignment:
Q  166 tttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    |||||| ||||||||||||  ||||||||  |||||||||||||||| || |||||||||||    
T  8187156 tttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 570392 - 570448
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaat 229  Q
    ||||||| |||| |||||||||  |||||||| |||||| |||||||||||||||||    
T  570392 tcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaat 570448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 8184236 - 8184034
Alignment:
Q  26 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 125  Q
    |||||||| | |||||| |||| || ||||||||||||| ||||| | |||||| |||||||| |  || ||||    |||||||  ||  ||| |||||    
T  8184236 atcacagttcctcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagt 8184137  T
Q  126 tgcacaagcccgctgcaactctttgagat--caaagaaatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaag 223  Q
    | || |||||| |  ||||||||||||||  || |||  || | |||| ||||||||||||  ||||||||  |||||||| ||||| ||||||||||||    
T  8184136 tccaaaagcccacaacaactctttgagattgcatagag-tgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaag 8184038  T
Q  224 ttca 227  Q
    ||||    
T  8184037 ttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 570248 - 570303
Alignment:
Q  30 cagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcac 85  Q
    |||| |||||||| |||||| |||||||||||||| ||||| |||||||| |||||    
T  570248 cagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 1513458 - 1513411
Alignment:
Q  180 ttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    |||||||||||||||  ||||| || ||||||||||||||||||||||    
T  1513458 ttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 546819 - 546881
Alignment:
Q  39 aaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    |||| ||||||||| |||| |||||| ||||| | ||||||||||||||| ||||| ||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgaca 546881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 1519200 - 1519146
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    ||||| ||||||  ||||||||  |||||||| ||||||||||||||||||||||    
T  1519200 tcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 1545814 - 1545868
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    ||||||||||||||  ||||||  |||||||||||||| ||||||| ||||||||    
T  1545814 tcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttca 1545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 1548468 - 1548371
Alignment:
Q  187 tgacaagtctaacacctccagtttgggaacttcaaagttcaat-gtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaa 283  Q
    ||||||||  ||||||||||||||||||| ||||||||||| |   ||||||||||| | || |||  |||| ||| ||||| |||||||| ||||||    
T  1548468 tgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaa 1548371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 55505293 - 55505236
Alignment:
Q  44 gatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    ||||||||| ||||||||||| ||||| | ||| ||||||||||| ||||| ||||||    
T  55505293 gatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca 55505236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 566315 - 566375
Alignment:
Q  258 ttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcaga 318  Q
    |||| ||||||||| ||||||||||| ||||| |||||||||||  ||| ||||| |||||    
T  566315 ttaagttcaaatgtgtaatgttacaacatatccttaaaacatgagtaatcccttcgtcaga 566375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 1508199 - 1508147
Alignment:
Q  36 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcc 88  Q
    ||||||| ||||||||| ||||||||||||||||| | | |||| ||||||||    
T  1508199 ttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactcc 1508147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 26 - 366
Target Start/End: Complemental strand, 11936481 - 11936140
Alignment:
Q  26 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 125  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||||||||||||    
T  11936481 atcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagt 11936382  T
Q  126 tgcacaagcccgctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagt 224  Q
    |||| |||||| || ||||||||||||||| || | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11936381 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 11936282  T
Q  225 tcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtc 324  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  11936281 tcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatacatc 11936182  T
Q  325 tttgcaatggctcaaatcaagaagctgtaaatttgggaaaca 366  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  11936181 tttgcaatggctcaaatcaagtagctataaatttgggaaaca 11936140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 26 - 366
Target Start/End: Complemental strand, 11948461 - 11948120
Alignment:
Q  26 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 125  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||||||||||||    
T  11948461 atcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagt 11948362  T
Q  126 tgcacaagcccgctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagt 224  Q
    |||| |||||| || ||||||||||||||| || | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11948361 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 11948262  T
Q  225 tcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtc 324  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  11948261 tcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatacatc 11948162  T
Q  325 tttgcaatggctcaaatcaagaagctgtaaatttgggaaaca 366  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  11948161 tttgcaatggctcaaatcaagtagctataaatttgggaaaca 11948120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 6402915 - 6403040
Alignment:
Q  187 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaat 286  Q
    ||||||||  ||||| || |||| ||||||| ||||||| | |  ||||||||||| ||||||||| | |||||| |||||||| |||||||||||| ||    
T  6402915 tgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacat 6403014  T
Q  287 atcattaaaacatgaacaataccttc 312  Q
     || ||||||| |||  |||||||||    
T  6403015 ctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 28935189 - 28935292
Alignment:
Q  263 ttcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtctttgcaatggctcaaatcaagaagctgtaaatttggga 362  Q
    ||||||||||||||||||  | || |||| ||||||| |||||||||||||||| ||||||| |  |||||| ||||||||||   ||| ||||| ||||    
T  28935189 ttcaaatgtctaatgttaagacatttcatcaaaacataaacaataccttcttcacatacgtcatcacaatggttcaaatcaagcgactgcaaattaggga 28935288  T
Q  363 aaca 366  Q
    ||||    
T  28935289 aaca 28935292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 6603389 - 6603333
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    |||| |||||||||| |||| ||||| ||||||||||||||||||||||| ||||||    
T  6603389 atctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgaca 6603333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 12102307 - 12102363
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaat 229  Q
    ||||||| ||||  ||||||||  |||||||||||||||||||||||||||||||||    
T  12102307 tcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaat 12102363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 28934954 - 28935007
Alignment:
Q  38 caaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactccttt 91  Q
    ||||| ||||||||| ||||||||||| ||||| |||||||| |||||||||||    
T  28934954 caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactccttt 28935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 312
Target Start/End: Original strand, 6394776 - 6395044
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaac 144  Q
    |||||||||| ||||||||| ||||| |||||||||| ||| || || || ||||||  || ||||   | ||||   | ||||| |||||| |  |||     
T  6394776 atctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaat 6394875  T
Q  145 tctttgagatcaaagaaatgattt-atcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcag 243  Q
    |||||||||||| |||||   ||| ||| ||||| ||||||  ||||||||  ||||||||||| | ||||||| ||||||||| |  | |||| ||||     
T  6394876 tctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcac 6394975  T
Q  244 tcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttc 312  Q
    | ||||||||  || ||| ||||||||| |||  |||||| || || ||||||| |||  |||||||||    
T  6394976 ttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 6423251 - 6423327
Alignment:
Q  166 tttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttca 242  Q
    |||||||  ||||||||||  ||||||||  ||||||||||| |||||||||| |||||||| || | |||||||||    
T  6423251 tttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttca 6423327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 6432073 - 6432256
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaac 144  Q
    |||| ||||| ||||||||||||||| |||||| |||||||||| ||||  ||||||   ||||||   |  ||  | ||||||| |||||| |  |||     
T  6432073 atctttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaat 6432172  T
Q  145 tctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    ||||| |||||| | ||| || || ||| ||||| ||||||  ||||||||  ||||||| ||| |||||||||||||||||||    
T  6432173 tctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttca 6432256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 312
Target Start/End: Complemental strand, 6585419 - 6585156
Alignment:
Q  50 tctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactcttt 149  Q
    |||||||||||||||  |||| ||||||||||||| ||| ||||| ||||||  |||||||  ||| ||| | |||| || |||| |    |||||||||    
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactcttt 6585320  T
Q  150 gagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttg 248  Q
    ||||||| | | | || || ||| |||||  |||||  ||||||||  || |||||||  | || ||||  |||||| | |  ||||||||||| |||||    
T  6585319 gagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttg 6585220  T
Q  249 aacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttc 312  Q
    |||| | ||| || |||||||| ||||| ||| || || || |||||||||||  |||||||||    
T  6585219 aacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 364
Target Start/End: Original strand, 7119212 - 7119386
Alignment:
Q  187 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaat 286  Q
    ||||||||  ||||||||||| | | ||||  ||||||||| |  ||||||||||| |||||||||| | | ||| ||||||||| |||| ||| || ||    
T  7119212 tgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacat 7119311  T
Q  287 atcattaaaacatgaacaataccttcttcagatacgtctttgcaatggctcaaatcaagaagctgtaaatttgggaaa 364  Q
     || ||||||| |||  |||||   ||||||||| ||  ||||||    ||||||||||||| |||||||| ||||||    
T  7119312 ctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaa 7119386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 364
Target Start/End: Original strand, 7131690 - 7131864
Alignment:
Q  187 tgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaat 286  Q
    ||||||||  ||||||||||| | | ||||  ||||||||| |  ||||||||||| |||||||||| | | ||| ||||||||| |||| ||| || ||    
T  7131690 tgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacat 7131789  T
Q  287 atcattaaaacatgaacaataccttcttcagatacgtctttgcaatggctcaaatcaagaagctgtaaatttgggaaa 364  Q
     || ||||||| |||  |||||   ||||||||| ||  ||||||    ||||||||||||| |||||||| ||||||    
T  7131790 ctccttaaaacttgacaaatac---cttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaa 7131864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 9411404 - 9411452
Alignment:
Q  181 tgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaat 229  Q
    |||| |||||||||  ||||||||||| |||||||| ||||||||||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaat 9411452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 10579924 - 10579876
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttct 93  Q
    |||||||| ||||||||||| ||||| ||||||||||| ||||| ||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttct 10579876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 14820605 - 14820661
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    ||||||||||| |||||||| ||||  |||||||||||||| || ||||| ||||||    
T  14820605 atctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgaca 14820661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 26 - 366
Target Start/End: Complemental strand, 28246499 - 28246160
Alignment:
Q  26 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 125  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||  |||||| ||| || ||||||||||||||||||||||||||||||    
T  28246499 atcacagtacttcaaattgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagt 28246400  T
Q  126 tgcacaagcccgctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagt 224  Q
    |||| ||||||||| ||||||||||||||| || | | ||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28246399 tgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 28246302  T
Q  225 tcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacgtc 324  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  28246301 tcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatacatc 28246202  T
Q  325 tttgcaatggctcaaatcaagaagctgtaaatttgggaaaca 366  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  28246201 tttgcaatggctcaaatcaagtagctgtaaatttaggaaaca 28246160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 27922420 - 27922603
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaac 144  Q
    |||| ||||||||| ||||| ||||| |||||||| |||||||| ||||  |||| | | | ||||  || |||||||| || || |||||| |  ||||    
T  27922420 atctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaac 27922519  T
Q  145 tctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    |||||||||||| | ||| || || ||| |||||  ||||| |||||||||  |||||||||| ||||||||||||||||||||    
T  27922520 tctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 34936358 - 34936171
Alignment:
Q  37 tcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagccc 136  Q
    |||||| |||||| |||| ||||||||| |||||||||||| | |  ||||| |||||||||||| |   ||||  || |||| | ||||||| ||||||    
T  34936358 tcaaattgatctccctcaattgtgtgcaattttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagccc 34936259  T
Q  137 gctgcaactctttgagat--caaagaaatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaag 223  Q
     |  |||||||||| |||  || |||  || |||||| |||||||||||| |||||||||| |||||||| ||||| ||||| ||||||    
T  34936258 acgacaactctttgcgatggcatagag-tgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 21235599 - 21235653
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    ||||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  21235599 tcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 17636581 - 17636405
Alignment:
Q  51 ctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactctttg 150  Q
    |||| ||||||||| ||||| | ||||||  ||||||||||||| ||||||    ||||| ||| |||||||| ||||| ||| |     ||||||||||    
T  17636581 ctcaattgtgtgcaattttctagcacatgcctcactcctttctc-gtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactctttg 17636483  T
Q  151 agatcaaaga-aatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttca 227  Q
    |||||| | | |||| || ||||||||||| |||   ||||||||  |||||||||| ||||||||||||||||||||    
T  17636482 agatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttca 17636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 18315364 - 18315228
Alignment:
Q  141 caactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagct 239  Q
    |||||||||||||||| | | | || || ||| |||||| |||||  ||||||||  |||||||||||||||||||||| |||||||| |  | ||||||    
T  18315364 caactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagct 18315265  T
Q  240 tcagtcttgaacagcgagttaaattcaaatgtctaat 276  Q
    ||| |||||||   |||| ||| ||||| ||||||||    
T  18315264 tcattcttgaatcacgagctaagttcaactgtctaat 18315228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 32151289 - 32151396
Alignment:
Q  121 acagttgcacaagcccgctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttc 219  Q
    ||||||||| |||||| || |||||||||||||||| | | | || || ||| ||||  |||||| ||||||||| |||||||||||| |||| ||||||    
T  32151289 acagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttc 32151388  T
Q  220 aaagttca 227  Q
     |||||||    
T  32151389 gaagttca 32151396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 21235455 - 21235510
Alignment:
Q  30 cagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcac 85  Q
    |||| |||||||| |||||| |||||||||||||| ||||| |||||||| |||||    
T  21235455 cagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 21235510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 1657142 - 1657481
Alignment:
Q  24 tcatcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgaca 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| || |  |||||||||||||||||||||||||    
T  1657142 tcatcacagtacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcaacaccttcacaaaatttaagtgaca 1657241  T
Q  124 gttgcacaagcccgctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaa 222  Q
    |||||| ||||||||||||||||||||||||| || | | |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1657242 gttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaa 1657341  T
Q  223 gttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagatacg 322  Q
    |||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  1657342 gttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatg 1657437  T
Q  323 tctttgcaatggctcaaatcaagaagctgtaaatttgggaaaca 366  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  1657438 tctttgcaatggctcaaatcaagtagctgtaaatttgggaaaca 1657481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 312
Target Start/End: Complemental strand, 51113968 - 51113700
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaac 144  Q
    |||||||| |||| |||||||||||| |||||||| |||||||| ||||| ||||||   | ||||  ||| ||| ||||||||| |||||| |  ||||    
T  51113968 atctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaac 51113869  T
Q  145 tctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcag 243  Q
    |||| ||||||| | | | || || ||| |||||  |||||  |||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||    
T  51113868 tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcag 51113769  T
Q  244 tcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttc 312  Q
    | ||||||||  || ||| |||||||| ||||| |||||| || || ||||||| |||  |||||||||    
T  51113768 ttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc 51113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 48 - 252
Target Start/End: Complemental strand, 51764624 - 51764419
Alignment:
Q  48 tctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactct 147  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||   ||||||  ||  ||| | ||||||| ||||||||  ||| |||    
T  51764624 tctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattct 51764525  T
Q  148 ttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtct 246  Q
    ||||||||  | | | || |||||| |||||| |||||||||||||||||||||||||||| || |||||| ||||||||| |  ||||||||||| |||    
T  51764524 ttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactct 51764425  T
Q  247 tgaaca 252  Q
    ||||||    
T  51764424 tgaaca 51764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 514921 - 514775
Alignment:
Q  39 aaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgc 138  Q
    |||| ||||||||||||| ||||||| ||||  |||||||| ||||||||  |||| |||| ||||||||||  ||  ||| | ||||||| |||||| |    
T  514921 aaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccac 514822  T
Q  139 tgcaactctttgagatca-aagaaatgatttatcgtcaactcttgta 184  Q
     ||||||||| ||||||| | ||| || || |||||| |||||||||    
T  514821 agcaactcttcgagatcacatgaagtgcttcatcgtcgactcttgta 514775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 51121081 - 51121034
Alignment:
Q  44 gatctctctcagttgtgtgcatttttcaaccacatgtttcactccttt 91  Q
    |||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  51121081 gatcactctcaattgtgtgcagttttctaccacatgtttcactccttt 51121034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 51120951 - 51120841
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtc 272  Q
    ||||||||||||   |||||||  |||||||||| |||| ||||||||||||||| |  | | || |||| ||||||||| |  || || ||||| ||||    
T  51120951 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtc 51120852  T
Q  273 taatgttacaa 283  Q
    |||||||||||    
T  51120851 taatgttacaa 51120841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 72 - 312
Target Start/End: Complemental strand, 41889714 - 41889473
Alignment:
Q  72 accacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaactctttgagatcaaagaaa-tgatttat 170  Q
    |||||||| |||||||| ||||  |||||| | | ||||  ||||||| ||| || |  ||||||||  |||||||||||||||  | ||| || || ||    
T  41889714 accacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcat 41889615  T
Q  171 cgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatg 270  Q
    | |||||| ||||| |||| ||||  |||||||||| ||||||||||| |||||||| |  ||||||||||| | ||||||| |  | ||| |||||||     
T  41889614 catcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaata 41889515  T
Q  271 tctaatgttacaaaatatcattaaaacatgaacaataccttc 312  Q
    ||||||||||||| ||||| ||||||| |||  |||||||||    
T  41889514 tctaatgttacaacatatccttaaaacttgagtaataccttc 41889473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 320
Target Start/End: Original strand, 32267387 - 32267660
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaac 144  Q
    |||| ||| ||||| ||||| ||||| || ||||| |||||||| ||||  |||| | | | ||||  ||||||||||| || || |||||| |  ||||    
T  32267387 atctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaac 32267486  T
Q  145 tctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcag 243  Q
    |||||||||||| | ||| || || ||| |||||| ||||   ||||||||  || ||||||| |||||||||||||||||||| |   |||   ||||     
T  32267487 tctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttctagt---ttcac 32267583  T
Q  244 tcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagata 320  Q
    | |||||||  | | ||| ||||||||||||||||||||| ||||| ||||||  ||||| ||||||||||||||||    
T  32267584 tgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagata 32267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 316
Target Start/End: Complemental strand, 41901722 - 41901453
Alignment:
Q  45 atctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccgctgcaac 144  Q
    |||| ||||| ||| || || ||||| |||||||| |||||||| ||||  |||||| | | ||||  || |||||||| || || ||| || |  ||||    
T  41901722 atctttctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaac 41901623  T
Q  145 tctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagcttcag 243  Q
    |||||||||||| | ||| || || ||| |||||| ||||| |||||||||  ||||||||||||||||||||||||||| || || |   |||  |||     
T  41901622 tctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaag-tctattt--ctagtctcac 41901526  T
Q  244 tcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttca 316  Q
    | | |||||    | ||| ||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  41901525 tatggaacacttggataagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttca 41901453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 20478267 - 20478222
Alignment:
Q  47 ctctctcagttgtgtgcatttttcaaccacatgtttcactcctttc 92  Q
    |||||||||||||||||| ||||| || ||||||||| ||||||||    
T  20478267 ctctctcagttgtgtgcagttttctacgacatgtttcgctcctttc 20478222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 38267614 - 38267562
Alignment:
Q  173 tcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagtt 225  Q
    ||||||||||||  || |||||| |||||||| || |||||||||||||||||    
T  38267614 tcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 320
Target Start/End: Complemental strand, 1037858 - 1037575
Alignment:
Q  38 caaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagcccg 137  Q
    ||||||||  ||||| ||||||||||| ||||| || ||||||||||| || ||||| |||||  | ||||||  ||  ||  ||||||| | ||||||     
T  1037858 caaatcgacttctctgagttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagccca 1037759  T
Q  138 ctgcaactctttgagatcaaagaaa-tgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagta 236  Q
    |  ||| |||||||||||| | | | || || ||| ||||| | ||||  ||||||||  |||||||| | ||  ||||||| |||||| | | ||||||    
T  1037758 caacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagta 1037659  T
Q  237 gcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcagata 320  Q
    | |||| ||||||| ||   | |||||||||||||||||  |||||| || || ||||||| | |  |||||||||||||||||    
T  1037658 gtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagata 1037575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 45245280 - 45245015
Alignment:
Q  37 tcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagttgcacaagccc 136  Q
    |||||| ||||||| | ||||||||||| ||||| ||||||||||||||||| || || ||||||   | |||   ||| | | | ||||||| ||||||    
T  45245280 tcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccc 45245181  T
Q  137 gctgcaactctttgagatca-aagaaatgatttatcgtcaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagt 235  Q
     |  |||||||||||||||| | | | || || ||| |||||  ||||   |||||| |  |||||||| ||||| |||||||||||||| | |  | ||    
T  45245180 acgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccacgt 45245081  T
Q  236 agcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaaaatatcattaaaacatga 301  Q
    |  | |||||||||||||| |  ||| || ||||| |||||||||||| || || |||||||||||    
T  45245080 aattccagtcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaacatga 45245015  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 7977712 - 7977764
Alignment:
Q  266 aaatgtctaatgttacaaaatatcattaaaacatgaacaataccttcttcaga 318  Q
    |||||||||||||||||| || || ||||||| ||| ||||||||||||||||    
T  7977712 aaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga 7977764  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 29719118 - 29719054
Alignment:
Q  37 tcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    |||||| |||||| ||||||||  |||| |||| |||||||||||||||||| ||||| ||||||    
T  29719118 tcaaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgaca 29719054  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 19468683 - 19468630
Alignment:
Q  48 tctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    ||||||||||||| ||| |||||   ||||||||||||||||||||| ||||||    
T  19468683 tctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgaca 19468630  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 19468533 - 19468477
Alignment:
Q  197 aacacctccagtttgggaacttcaaagttcaatgtaagtagcttcagtcttgaacag 253  Q
    ||||||||||| ||||||||| ||||||||| |  |||||| |||| ||||||||||    
T  19468533 aacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacag 19468477  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 29659091 - 29659027
Alignment:
Q  37 tcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 101  Q
    |||||| ||||||  ||||||| ||||| |||| |||||||||||| ||||| ||||| ||||||    
T  29659091 tcaaattgatctcagtcagttgcgtgcagttttgaaccacatgttttactccattctctgtgaca 29659027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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