View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10543_7 (Length: 343)
Name: NF10543_7
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10543_7 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0145 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 17434022 - 17433674
Alignment:
| Q |
1 |
acatagactagaataataaacatatcatattaactagattaattttacgaaaagtgttaagtcaatatgtcctctagaaaaaccattttcttttagaaaa |
100 |
Q |
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| T |
17434022 |
acatagactagaataataaacatatcatattaactagattaattttacgaaaagtgttaagtcaatatgtcctctagaaaaaccattttcttttagaaaa |
17433923 |
T |
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| Q |
101 |
tatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaagagtttgaaagcatggctaggtttttccttgttgatgaaac |
200 |
Q |
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| T |
17433922 |
tatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaagagtttgaaagcatggctaggtttttccttgttgatgaaac |
17433823 |
T |
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| Q |
201 |
taagagtttgatgaacataaacttcttcatttagaaatccactnnnnnnntggacattttacatccatttgaaaaagtttaatgcatttatgagttgt-- |
298 |
Q |
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| T |
17433822 |
taagagtttgatgaacataaacttcttcatttagaaatccactaaaaaaatggacattttacatccatttgaaaaaatttaatgcatttatgagttgtat |
17433723 |
T |
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| Q |
299 |
----acataagtttaatacatttagagagaaaaacatagagaggaagtt |
343 |
Q |
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| T |
17433722 |
atgcacataagtttaatgcatttagagagaaaaacatagagaggaagtt |
17433674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 14936741 - 14936704
Alignment:
| Q |
257 |
ttttacatccatttgaaaaagtttaatgcatttatgag |
294 |
Q |
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| T |
14936741 |
ttttacgtccatttgaaaaagttttatgcatttatgag |
14936704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 8916149 - 8915968
Alignment:
| Q |
61 |
gtcaatatgtcctctagaaaaaccatttt-cttttagaaaatatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaa |
159 |
Q |
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|||||| ||||||||||||||||| |||| | |||||| || | |||||||||| |||||| | ||| || ||||||||||||||||||| || |
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| T |
8916149 |
gtcaatctgtcctctagaaaaaccctttttcctttagataagagttcaatctctcataccaaacccaatgtgattatttgagaccatatagagatcttgt |
8916050 |
T |
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| Q |
160 |
gagtttgaaagcatggctaggtttttccttgttgatgaaactaagagtttgatgaacataaacttcttcatttagaaatcca |
241 |
Q |
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| T |
8916049 |
aagtttgaaaacatggtttggtttttctttattaataaaactaggaggttgataaacatagacgtcttcattaagaaatcca |
8915968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 21181622 - 21181467
Alignment:
| Q |
62 |
tcaatatgtcctctagaaaaaccattttcttttagaaaatatctcaatctctcgtaccaatttcttggtgcttgtttgagaccatatagagattttaaga |
161 |
Q |
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| T |
21181622 |
tcaatttgtcatcttgaaaaac-attttctttcaaaaaggaactcaatctctcatatcaagcccttggtgcttgtttgagaccatatagaaccttagtga |
21181524 |
T |
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| Q |
162 |
gtttgaaagcatggctaggtttttccttgttgatgaaactaagagtttgatgaacat |
218 |
Q |
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| T |
21181523 |
gtttgaaaatatgattaggttttttgttgttgatgaaaccaggagtttgatgaacat |
21181467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 15326333 - 15326370
Alignment:
| Q |
257 |
ttttacatccatttgaaaaagtttaatgcatttatgag |
294 |
Q |
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| T |
15326333 |
ttttacgtccatttgaaaaagttttatgcatttatgag |
15326370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 18712436 - 18712399
Alignment:
| Q |
257 |
ttttacatccatttgaaaaagtttaatgcatttatgag |
294 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
18712436 |
ttttacgtccatttgaaaaagttttatgcatttatgag |
18712399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0145 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 33380 - 33418
Alignment:
| Q |
254 |
acattttacatccatttgaaaaagtttaatgcatttatg |
292 |
Q |
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| T |
33380 |
acatttcacatccatttgaaaaagtttaatgcttttatg |
33418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 45494771 - 45494808
Alignment:
| Q |
257 |
ttttacatccatttgaaaaagtttaatgcatttatgag |
294 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
45494771 |
ttttacgtccatttgaaaaagttttatgcatttatgag |
45494808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 21755671 - 21755634
Alignment:
| Q |
257 |
ttttacatccatttgaaaaagtttaatgcatttatgag |
294 |
Q |
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| T |
21755671 |
ttttacgtccatttgaaaaagttttatgcatttatgag |
21755634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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