View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10543_low_2 (Length: 330)
Name: NF10543_low_2
Description: NF10543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10543_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 35501425 - 35501730
Alignment:
| Q |
11 |
caaaggaacaaacataagaaaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacctgatca |
110 |
Q |
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| T |
35501425 |
caaaggaacaaacataagaaaacaaaccagatatttgaattccttagtctacaaatatatgtaattggacattcaggaggggcagaaagtaacctgatca |
35501524 |
T |
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| Q |
111 |
cgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaaccttcatccatgtcacgctcactatgtctgatt |
210 |
Q |
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| T |
35501525 |
cgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaaccttcatccatgtcacgctcactatgtctgatt |
35501624 |
T |
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| Q |
211 |
tgtcaacttcaattgatttaccacccccctgtctcttccataaaattcccccagaatatatttttatctgccccggattctgcaaccccgataatatgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501625 |
tgtcaacttcaattgatttaccacccccctgtctcttccataaaattcccccagaatatatttttatctgccccggattctgcaaccccgataatatgtc |
35501724 |
T |
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| Q |
311 |
atatgt |
316 |
Q |
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|||||| |
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| T |
35501725 |
atatgt |
35501730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 7069935 - 7069743
Alignment:
| Q |
102 |
acctgatcacgaaatccagtgaatttgtagaacaacccatctttgatctgaacaccaagttgattactctttggaaccttcatccatgtcacgctcacta |
201 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || | | || |
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| T |
7069935 |
acctgatcacggaaaccagtgaatttgtagaacaacccatctttgatctgaacaccgagttgatttgtctttggaaccttcatccatgttactcccgtta |
7069836 |
T |
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| Q |
202 |
tgtctgatttgtcaacttcaattgatttaccacccccctgtctcttccataaaattcccccagaatatatttttatctgccccggattctgca |
294 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7069835 |
tgtctgccttgtcaacatcaattgatttaccacctccctgtctcttccataaaattcctccagaatatatttttatctgccccggattctgca |
7069743 |
T |
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