View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10544_1 (Length: 519)

Name: NF10544_1
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10544_1
NF10544_1
[»] chr5 (5 HSPs)
chr5 (134-311)||(25902744-25902921)
chr5 (11-139)||(25899668-25899796)
chr5 (36-184)||(25902796-25902945)
chr5 (386-519)||(25902994-25903126)
chr5 (185-291)||(25899692-25899796)
[»] chr6 (2 HSPs)
chr6 (383-442)||(7143232-7143291)
chr6 (383-442)||(8682423-8682482)
[»] chr7 (7 HSPs)
chr7 (72-136)||(1382658-1382721)
chr7 (72-136)||(1388763-1388826)
chr7 (72-135)||(1356342-1356404)
chr7 (463-510)||(1356577-1356624)
chr7 (463-509)||(1372573-1372619)
chr7 (471-509)||(1382820-1382858)
chr7 (471-509)||(1388925-1388963)
[»] chr4 (2 HSPs)
chr4 (21-92)||(39811459-39811532)
chr4 (70-127)||(21119465-21119521)
[»] chr2 (1 HSPs)
chr2 (14-136)||(17361687-17361810)
[»] chr3 (1 HSPs)
chr3 (99-131)||(11436233-11436265)


Alignment Details
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 134 - 311
Target Start/End: Original strand, 25902744 - 25902921
Alignment:
Q  134 aggtgtggcagaggtcttagagctacctagtagttttatgttattgtagtagggtagtggtgtggtggatagtgggaccgttaaatgagagaatttagaa 233  Q
    ||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  25902744 aggtgtggcaggggtcttagagccacctaatagttttatgttgttgtagtagggtagtggtgtggtggatagagggaccgttgaatgagagagtttagaa 25902843  T
Q  234 gcaattttgcaagaggtttcatggaaggtgggcttatggtcgtagacgtggtaggtgtgcaggggtcttagagctacc 311  Q
     ||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||    
T  25902844 ccaattttgcaagaggtttcatggaaggtggatttatcgtcgtagacgtggtaggtgtgcaggagtcttagagctacc 25902921  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 25899668 - 25899796
Alignment:
Q  11 cagagaccgtgtcttatctgttataggtagtggtgtggtggatagagggactgttgaatgagagtttagaagcaattttgcaagaggtttcatggagggc 110  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25899668 cagagaccgtgtcttatatgttatgggtagtggtgtggtggatagagggagcgttgaatgagagtttagaagcaattttgcaagaggtttcatggagggc 25899767  T
Q  111 gggtttatcgtcgtagacgtggtaggtgt 139  Q
    ||||||||||| |||||||||||||||||    
T  25899768 gggtttatcgttgtagacgtggtaggtgt 25899796  T

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Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 25902796 - 25902945
Alignment:
Q  36 ggtagtggtgtggtggatagagggactgttgaatgaga--gtttagaagcaattttgcaagaggtttcatggagggcgggtttatcgtcgtagacgtggt 133  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||||||| || || ||||||||||||||||||||    
T  25902796 ggtagtggtgtggtggatagagggaccgttgaatgagagagtttagaaccaattttgcaagaggtttcatggaaggtggatttatcgtcgtagacgtggt 25902895  T
Q  134 aggtgtggcagaggtcttagagctacctagtagttttatgttattgtagta 184  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||||||    
T  25902896 aggtgt-gcaggagtcttagagctacctagtagttttatgttgttgtagta 25902945  T

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Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 386 - 519
Target Start/End: Original strand, 25902994 - 25903126
Alignment:
Q  386 taacctacatataatttgtgtttaattcatacaatatatgtctagtttgtgttgtttagtatcannnnnnnnataacttcactaatgcatgtttatatca 485  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||  |||||||||||||||||    
T  25902994 taacctacgtataatttgtgtttaattcatacaatctatgtctagtttgtgttgtttagtatca-tttttttataacttcatgaatgcatgtttatatca 25903092  T
Q  486 tatgattatataatttgtatgtatttgagaaaaa 519  Q
    ||| ||||||||||||||||||||  ||||||||    
T  25903093 tataattatataatttgtatgtatcagagaaaaa 25903126  T

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Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 25899692 - 25899796
Alignment:
Q  185 gggtagtggtgtggtggatagtgggaccgttaaatgagagaatttagaagcaattttgcaagaggtttcatggaaggtgggcttatggtcgtagacgtgg 284  Q
    ||||||||||||||||||||| |||| |||| ||||||||  |||||||||||||||||||||||||||||||| || ||| |||| || ||||||||||    
T  25899692 gggtagtggtgtggtggatagagggagcgttgaatgagag--tttagaagcaattttgcaagaggtttcatggagggcgggtttatcgttgtagacgtgg 25899789  T
Q  285 taggtgt 291  Q
    |||||||    
T  25899790 taggtgt 25899796  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 7143232 - 7143291
Alignment:
Q  383 ttgtaacctacatataatttgtgtttaattcatacaatatatgtctagtttgtgttgttt 442  Q
    |||||||||||  |||||||||||||||||| |||||| ||||| || ||||||||||||    
T  7143232 ttgtaacctacggataatttgtgtttaattcgtacaatctatgtttaatttgtgttgttt 7143291  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 8682423 - 8682482
Alignment:
Q  383 ttgtaacctacatataatttgtgtttaattcatacaatatatgtctagtttgtgttgttt 442  Q
    |||||||||||  |||||||||||||||||| |||||| ||||| || ||||||||||||    
T  8682423 ttgtaacctacggataatttgtgtttaattcgtacaatctatgtttaatttgtgttgttt 8682482  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 1382658 - 1382721
Alignment:
Q  72 gagtttagaagcaattttgcaagaggtttcatggagggcgggtttatcgtcgtagacgtggtagg 136  Q
    |||||||||| |||||| ||| |||||| |||||||||||||| |||||| |||| |||||||||    
T  1382658 gagtttagaatcaatttagcaggaggtt-catggagggcgggtctatcgttgtaggcgtggtagg 1382721  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 1388763 - 1388826
Alignment:
Q  72 gagtttagaagcaattttgcaagaggtttcatggagggcgggtttatcgtcgtagacgtggtagg 136  Q
    |||||||||| |||||| ||| |||||| |||||||||||||| |||||| |||| |||||||||    
T  1388763 gagtttagaatcaatttagcaggaggtt-catggagggcgggtctatcgttgtaggcgtggtagg 1388826  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 1356342 - 1356404
Alignment:
Q  72 gagtttagaagcaattttgcaagaggtttcatggagggcgggtttatcgtcgtagacgtggtag 135  Q
    |||||| ||| ||||||||||  ||||| ||||||||||||||||||||| |||| ||||||||    
T  1356342 gagtttggaatcaattttgcagaaggtt-catggagggcgggtttatcgttgtaggcgtggtag 1356404  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 1356577 - 1356624
Alignment:
Q  463 ttcactaatgcatgtttatatcatatgattatataatttgtatgtatt 510  Q
    ||||| ||||||||||||||||| |||||||| |||| ||||||||||    
T  1356577 ttcacaaatgcatgtttatatcaaatgattatgtaatctgtatgtatt 1356624  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 509
Target Start/End: Original strand, 1372573 - 1372619
Alignment:
Q  463 ttcactaatgcatgtttatatcatatgattatataatttgtatgtat 509  Q
    ||||| ||||||||||||||||| | ||||||||||| |||||||||    
T  1372573 ttcacgaatgcatgtttatatcaaaagattatataatctgtatgtat 1372619  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 1382820 - 1382858
Alignment:
Q  471 tgcatgtttatatcatatgattatataatttgtatgtat 509  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  1382820 tgcatgtttatatcaaaggattatataatttgtatgtat 1382858  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 509
Target Start/End: Original strand, 1388925 - 1388963
Alignment:
Q  471 tgcatgtttatatcatatgattatataatttgtatgtat 509  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  1388925 tgcatgtttatatcaaaggattatataatttgtatgtat 1388963  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 39811532 - 39811459
Alignment:
Q  21 gtcttatctgttataggtagtggtgtggtggatagagggactgttgaatgagag--tttagaagcaattttgca 92  Q
    ||||||||||| || || |||||||||||||| |  |||||||||||| |||||  ||||||||||||| ||||    
T  39811532 gtcttatctgtcatgggaagtggtgtggtggagaccgggactgttgaaggagagattttagaagcaattatgca 39811459  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 21119465 - 21119521
Alignment:
Q  70 gagagtttagaagcaattttgcaagaggtttcatggagggcgggtttatcgtcgtaga 127  Q
    |||||||| ||||||||||||||||||| |||| ||||| | | ||||||||||||||    
T  21119465 gagagtttggaagcaattttgcaagagg-ttcagggaggacagatttatcgtcgtaga 21119521  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 17361810 - 17361687
Alignment:
Q  14 agaccgtgtcttatctgttataggtagtggtgtggtggatagagggactgttgaatg--agagtttagaagcaattttgcaagaggtttcatggagggcg 111  Q
    ||||| ||||||||| ||| | || ||||||| |||||| || |||| || ||||||  |||||||  |||||||| |  |||||||| |||||||||||    
T  17361810 agaccatgtcttatccgttttgggcagtggtgcggtggagagggggagtgctgaatgggagagtttgaaagcaattctttaagaggtt-catggagggcg 17361712  T
Q  112 ggtttatcgtcgtagacgtggtagg 136  Q
    | ||||| ||||||| |||| ||||    
T  17361711 gatttattgtcgtaggcgtgttagg 17361687  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 11436233 - 11436265
Alignment:
Q  99 ttcatggagggcgggtttatcgtcgtagacgtg 131  Q
    |||||||||||||||||||||||||||| ||||    
T  11436233 ttcatggagggcgggtttatcgtcgtaggcgtg 11436265  T

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