View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10544_2 (Length: 477)
Name: NF10544_2
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10544_2 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 72 - 462
Target Start/End: Original strand, 2579223 - 2579610
Alignment:
| Q |
72 |
atccattcttgttattgatcaatgcacttgtgtcactgttgggaattctctattttcttcatgataggttggaaagattctttgccacacttgaaacatg |
171 |
Q |
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| T |
2579223 |
atccattcttgttattgatcaatgcacttgtgccactgttgggaattctctattttcttcatgataggttggaaagattctttgccacacttgaaacatg |
2579322 |
T |
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| Q |
172 |
gtaatgatcatctttcaattaattaaggctannnnnnnnnctttgagaatgaaaagtgacacaattcctttgtataatccactggttgtccaattcatta |
271 |
Q |
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| T |
2579323 |
gtaatgatcatctttcaattaattaaggtta--tttttttcttagagaatgaaaagtgacacaattcctttgtataatccactggttgtccaattcatta |
2579420 |
T |
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| Q |
272 |
tgagatgtggactgattaaaattcgactannnnnnnnngtggttcgaccatgtgcgttgtttacagactattgtgtaannnnnnnctctactgttttttc |
371 |
Q |
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| T |
2579421 |
tgaaatgtggagtgattagaattcgactattttttttggtagtttgaccatgtgcgttgtttacaaactgttgtgtaattttttt-tctattgttttttc |
2579519 |
T |
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| Q |
372 |
gactagttttatagtctaattgcgctgtaattgatagctttttagtctcttccgatacttcttgtgctctagagacagctttggtttttag |
462 |
Q |
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| T |
2579520 |
gattagttttatagtctaactgcggtgtaattgatggccttttagtctcttccgatacttcttgtgctctagagacagctttagtttttag |
2579610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 2579180 - 2579245
Alignment:
| Q |
8 |
gttatagtatacaatctttctctcgactgattaaaattcatggatccattcttgttattgatcaat |
73 |
Q |
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| T |
2579180 |
gttatagtatacaatctttctctccactgattaaaattcatggatccattcttgttattgatcaat |
2579245 |
T |
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