View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10544_3 (Length: 444)
Name: NF10544_3
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10544_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 4718157 - 4717807
Alignment:
| Q |
1 |
aaatcagctccatagagaaaagcataatcattgacatctagaactgaaacaggactaagattttccatgctatgttctgtctgaatcttctttggtgaca |
100 |
Q |
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| T |
4718157 |
aaatcagctccatagagaaaagcataatcattgacatctagaactgaaacaggactaagattttccatgctatgttctgtctgaatcttctttggtgaca |
4718058 |
T |
|
| Q |
101 |
catgttttttcaccttgttcctcatttttggttcaacaaaccctttcttttgcctattaggcaatgaagaagttgaacatgaacttgaacttgaaccagc |
200 |
Q |
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| T |
4718057 |
catgttttttcaccttgttcctcatttttggttcaacaaaccctttcttttgtctattaggcaatgaagaagttgaacatgaacttgaacttgaaccagc |
4717958 |
T |
|
| Q |
201 |
atcaccaccatatccataataactacaattacaccttgtagaaacacttgaaaaatctttatctttactataatctctaacccttgatttatacttagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4717957 |
atcaccaccatatccataataactacaattacaccttgtagaaacacttgaaaaatctttatctttactacaatctctaacccttgatttatacttagaa |
4717858 |
T |
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| Q |
301 |
gaagatgaagaaaatggaacccttcttggttcatcttttaacttagaaatt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4717857 |
gaagatgaagaaaatggaacccttcttggttcatcttttaacttagaaatt |
4717807 |
T |
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