View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10544_4 (Length: 346)

Name: NF10544_4
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10544_4
NF10544_4
[»] chr2 (52 HSPs)
chr2 (24-234)||(9625826-9626036)
chr2 (237-346)||(34983277-34983386)
chr2 (235-346)||(22674788-22674899)
chr2 (235-346)||(38763713-38763824)
chr2 (235-346)||(2249580-2249691)
chr2 (235-346)||(6750054-6750165)
chr2 (235-342)||(13616015-13616122)
chr2 (235-346)||(23869662-23869773)
chr2 (235-338)||(38527173-38527276)
chr2 (235-346)||(44545777-44545888)
chr2 (235-346)||(1115086-1115197)
chr2 (233-340)||(28745546-28745655)
chr2 (295-346)||(43471502-43471553)
chr2 (234-279)||(36436297-36436342)
chr2 (234-346)||(1021116-1021230)
chr2 (295-346)||(16194311-16194362)
chr2 (297-340)||(17526080-17526123)
chr2 (295-346)||(41699243-41699294)
chr2 (295-346)||(42016562-42016613)
chr2 (297-346)||(11935424-11935473)
chr2 (297-346)||(26293221-26293270)
chr2 (301-346)||(44545664-44545709)
chr2 (303-346)||(3836388-3836431)
chr2 (295-346)||(11764853-11764904)
chr2 (295-338)||(19283986-19284029)
chr2 (301-342)||(1114977-1115018)
chr2 (295-340)||(7366210-7366255)
chr2 (301-346)||(7366329-7366374)
chr2 (301-346)||(11764972-11765017)
chr2 (301-346)||(13615898-13615943)
chr2 (301-346)||(16194430-16194475)
chr2 (301-346)||(26860597-26860642)
chr2 (301-346)||(31392724-31392769)
chr2 (301-346)||(34983454-34983499)
chr2 (301-346)||(38763892-38763937)
chr2 (301-346)||(42016681-42016726)
chr2 (301-336)||(3836284-3836319)
chr2 (295-338)||(12995025-12995068)
chr2 (295-346)||(26860710-26860761)
chr2 (295-338)||(34494531-34494574)
chr2 (301-336)||(36436127-36436162)
chr2 (241-280)||(42473566-42473605)
chr2 (308-346)||(2077562-2077600)
chr2 (301-346)||(1021003-1021048)
chr2 (301-346)||(2249759-2249804)
chr2 (301-346)||(6749941-6749986)
chr2 (301-346)||(11935310-11935355)
chr2 (301-346)||(23869841-23869886)
chr2 (301-346)||(26293338-26293383)
chr2 (297-346)||(36436230-36436279)
chr2 (236-268)||(12994975-12995007)
chr2 (232-280)||(32099925-32099973)
[»] chr5 (40 HSPs)
chr5 (235-346)||(3631258-3631369)
chr5 (234-346)||(26525277-26525389)
chr5 (235-346)||(9737754-9737865)
chr5 (236-346)||(43358410-43358520)
chr5 (234-346)||(8074286-8074399)
chr5 (238-346)||(16823133-16823241)
chr5 (295-346)||(7440528-7440579)
chr5 (233-338)||(13013310-13013415)
chr5 (237-346)||(43348635-43348744)
chr5 (234-338)||(25701476-25701580)
chr5 (240-346)||(29390273-29390379)
chr5 (295-346)||(15374174-15374225)
chr5 (235-345)||(19577229-19577338)
chr5 (236-346)||(28662117-28662227)
chr5 (235-340)||(41084635-41084738)
chr5 (235-338)||(30772878-30772981)
chr5 (295-346)||(9596213-9596264)
chr5 (301-336)||(30773057-30773092)
chr5 (235-281)||(26784911-26784957)
chr5 (301-346)||(9596100-9596145)
chr5 (301-346)||(26525164-26525209)
chr5 (301-346)||(32304587-32304632)
chr5 (304-336)||(37042611-37042643)
chr5 (301-336)||(3631437-3631472)
chr5 (303-346)||(7440415-7440458)
chr5 (295-338)||(13084698-13084741)
chr5 (297-340)||(30050145-30050188)
chr5 (295-346)||(32304700-32304751)
chr5 (243-281)||(6229071-6229109)
chr5 (301-335)||(8074184-8074218)
chr5 (308-342)||(20117489-20117523)
chr5 (301-335)||(25701366-25701400)
chr5 (297-339)||(36244239-36244281)
chr5 (234-279)||(9596280-9596325)
chr5 (301-346)||(10925687-10925732)
chr5 (301-346)||(16823309-16823354)
chr5 (297-346)||(20071261-20071310)
chr5 (297-346)||(20487033-20487082)
chr5 (235-280)||(26297122-26297167)
chr5 (301-346)||(43348812-43348857)
[»] chr4 (58 HSPs)
chr4 (234-342)||(6755827-6755935)
chr4 (233-346)||(11651014-11651127)
chr4 (235-346)||(40228478-40228590)
chr4 (237-338)||(2654966-2655067)
chr4 (235-338)||(13233229-13233332)
chr4 (235-346)||(44817597-44817708)
chr4 (297-340)||(9046135-9046178)
chr4 (295-346)||(13613140-13613191)
chr4 (235-346)||(27270353-27270463)
chr4 (295-346)||(36955058-36955109)
chr4 (235-281)||(36584423-36584469)
chr4 (235-336)||(44134493-44134594)
chr4 (235-281)||(51001475-51001521)
chr4 (235-346)||(18491186-18491297)
chr4 (235-346)||(19653692-19653803)
chr4 (234-281)||(31664276-31664323)
chr4 (295-346)||(43564477-43564528)
chr4 (295-346)||(50767093-50767144)
chr4 (295-346)||(54795777-54795828)
chr4 (296-346)||(4632753-4632803)
chr4 (238-338)||(38141613-38141714)
chr4 (235-346)||(31581798-31581909)
chr4 (236-346)||(44745638-44745748)
chr4 (234-276)||(22647109-22647151)
chr4 (301-346)||(10096391-10096436)
chr4 (301-346)||(13233408-13233453)
chr4 (297-334)||(18735241-18735278)
chr4 (301-346)||(22647289-22647334)
chr4 (301-346)||(36584601-36584646)
chr4 (301-346)||(41832555-41832600)
chr4 (301-346)||(44134671-44134716)
chr4 (235-338)||(16925106-16925208)
chr4 (299-346)||(133414-133461)
chr4 (295-346)||(10096504-10096555)
chr4 (301-336)||(12700513-12700548)
chr4 (234-277)||(13857611-13857654)
chr4 (311-346)||(13857687-13857722)
chr4 (303-346)||(18491367-18491410)
chr4 (301-336)||(31581695-31581730)
chr4 (301-336)||(36954955-36954990)
chr4 (295-346)||(45670019-45670070)
chr4 (308-346)||(10393895-10393933)
chr4 (234-276)||(13869141-13869183)
chr4 (235-281)||(52581455-52581500)
chr4 (301-346)||(6756007-6756052)
chr4 (303-340)||(7638811-7638848)
chr4 (295-340)||(12700622-12700667)
chr4 (301-346)||(13613027-13613072)
chr4 (297-334)||(18668990-18669027)
chr4 (297-334)||(18714841-18714878)
chr4 (301-346)||(36584488-36584533)
chr4 (309-346)||(36801909-36801946)
chr4 (235-268)||(36955136-36955169)
chr4 (301-346)||(38141492-38141537)
chr4 (309-346)||(43564604-43564641)
chr4 (309-346)||(44745525-44745562)
chr4 (301-346)||(44817485-44817530)
chr4 (304-340)||(4632645-4632681)
[»] chr7 (47 HSPs)
chr7 (235-346)||(26873702-26873813)
chr7 (238-346)||(44468069-44468177)
chr7 (235-346)||(46027679-46027790)
chr7 (235-340)||(23562701-23562806)
chr7 (235-338)||(36358366-36358469)
chr7 (235-346)||(44724111-44724222)
chr7 (295-346)||(9624055-9624106)
chr7 (234-346)||(45350050-45350161)
chr7 (239-338)||(17166869-17166968)
chr7 (235-346)||(36675535-36675646)
chr7 (295-346)||(44142821-44142872)
chr7 (301-346)||(44467956-44468001)
chr7 (235-338)||(43859090-43859193)
chr7 (295-346)||(22723824-22723875)
chr7 (295-346)||(31065671-31065722)
chr7 (295-346)||(31428796-31428847)
chr7 (295-346)||(31931959-31932010)
chr7 (301-336)||(36358255-36358290)
chr7 (301-346)||(17167045-17167090)
chr7 (309-346)||(22566628-22566665)
chr7 (301-346)||(22723711-22723756)
chr7 (301-346)||(23469331-23469376)
chr7 (301-346)||(29075120-29075165)
chr7 (235-280)||(29662932-29662977)
chr7 (301-346)||(31065558-31065603)
chr7 (301-346)||(31428915-31428960)
chr7 (301-346)||(36675422-36675467)
chr7 (301-346)||(42241864-42241909)
chr7 (301-346)||(44142939-44142984)
chr7 (301-346)||(44723998-44724043)
chr7 (297-336)||(8461760-8461799)
chr7 (238-281)||(16834390-16834433)
chr7 (295-346)||(18104367-18104417)
chr7 (235-278)||(19692467-19692510)
chr7 (295-346)||(29075233-29075284)
chr7 (301-336)||(40055769-40055804)
chr7 (301-336)||(45350229-45350264)
chr7 (301-336)||(46027858-46027893)
chr7 (239-280)||(8727725-8727766)
chr7 (301-346)||(9624174-9624219)
chr7 (309-346)||(23469444-23469481)
chr7 (297-346)||(29502180-29502229)
chr7 (239-280)||(29502246-29502287)
chr7 (297-346)||(30781072-30781121)
chr7 (301-346)||(39976499-39976544)
chr7 (297-346)||(40883343-40883392)
chr7 (235-271)||(9014391-9014427)
[»] chr3 (43 HSPs)
chr3 (235-346)||(29126092-29126203)
chr3 (235-346)||(52201981-52202092)
chr3 (235-338)||(18163717-18163820)
chr3 (235-346)||(13594922-13595033)
chr3 (235-340)||(7160345-7160450)
chr3 (235-338)||(36633486-36633589)
chr3 (235-338)||(50527690-50527793)
chr3 (235-338)||(52571481-52571584)
chr3 (295-346)||(4618210-4618261)
chr3 (235-340)||(12251562-12251667)
chr3 (235-328)||(16908875-16908968)
chr3 (238-346)||(22729222-22729330)
chr3 (235-346)||(28952440-28952551)
chr3 (235-346)||(49169792-49169903)
chr3 (241-346)||(1092926-1093031)
chr3 (301-346)||(35083971-35084016)
chr3 (295-336)||(44205471-44205512)
chr3 (301-346)||(45045388-45045433)
chr3 (301-346)||(49657147-49657192)
chr3 (305-346)||(52499246-52499287)
chr3 (301-336)||(1092823-1092858)
chr3 (295-346)||(44254649-44254700)
chr3 (300-346)||(11232203-11232249)
chr3 (301-346)||(11232090-11232135)
chr3 (301-346)||(13594809-13594854)
chr3 (295-340)||(21259489-21259534)
chr3 (301-346)||(22729398-22729443)
chr3 (295-336)||(25246283-25246324)
chr3 (301-346)||(32270855-32270900)
chr3 (301-346)||(44254536-44254581)
chr3 (301-346)||(50527569-50527614)
chr3 (301-346)||(52202160-52202205)
chr3 (240-275)||(7441702-7441737)
chr3 (295-346)||(27742545-27742596)
chr3 (238-281)||(32271031-32271074)
chr3 (295-346)||(45045268-45045319)
chr3 (234-276)||(2618883-2618925)
chr3 (301-346)||(16908754-16908799)
chr3 (309-346)||(28952327-28952364)
chr3 (301-346)||(29125979-29126024)
chr3 (309-346)||(32270968-32271005)
chr3 (297-346)||(34660807-34660856)
chr3 (301-346)||(36633665-36633710)
[»] chr1 (49 HSPs)
chr1 (235-346)||(919757-919868)
chr1 (235-338)||(6849752-6849855)
chr1 (235-346)||(16692996-16693107)
chr1 (232-346)||(44052506-44052620)
chr1 (235-340)||(8530082-8530187)
chr1 (233-346)||(33012104-33012217)
chr1 (235-336)||(17285351-17285452)
chr1 (235-338)||(29169941-29170044)
chr1 (235-337)||(37125692-37125794)
chr1 (295-346)||(51139745-51139796)
chr1 (235-346)||(29981754-29981865)
chr1 (235-346)||(47561726-47561837)
chr1 (300-338)||(9246956-9246994)
chr1 (301-346)||(42372148-42372193)
chr1 (301-346)||(46224694-46224739)
chr1 (235-346)||(42371969-42372080)
chr1 (295-346)||(24544765-24544816)
chr1 (295-346)||(40428828-40428879)
chr1 (295-342)||(44317626-44317673)
chr1 (295-338)||(45836903-45836946)
chr1 (235-281)||(9042530-9042576)
chr1 (245-338)||(23177351-23177444)
chr1 (301-346)||(919644-919689)
chr1 (301-346)||(8086408-8086453)
chr1 (301-346)||(24790613-24790658)
chr1 (301-346)||(25299022-25299067)
chr1 (301-346)||(29981641-29981686)
chr1 (297-346)||(32540641-32540690)
chr1 (301-346)||(40428715-40428760)
chr1 (301-346)||(40567144-40567189)
chr1 (301-346)||(45837022-45837067)
chr1 (297-338)||(46224815-46224856)
chr1 (301-346)||(48708351-48708396)
chr1 (295-336)||(48708474-48708515)
chr1 (235-276)||(48708535-48708576)
chr1 (237-277)||(37343027-37343067)
chr1 (236-280)||(46224874-46224918)
chr1 (295-346)||(8086289-8086340)
chr1 (301-336)||(37125871-37125906)
chr1 (301-336)||(44317745-44317780)
chr1 (243-281)||(17879973-17880011)
chr1 (300-346)||(25299135-25299181)
chr1 (312-346)||(40567042-40567076)
chr1 (301-346)||(16692883-16692928)
chr1 (309-346)||(23177528-23177565)
chr1 (301-346)||(33011991-33012036)
chr1 (232-281)||(43532470-43532519)
chr1 (235-268)||(45836854-45836887)
chr1 (301-346)||(47561905-47561950)
[»] chr8 (50 HSPs)
chr8 (233-346)||(41838003-41838116)
chr8 (295-346)||(2317121-2317172)
chr8 (232-338)||(24797110-24797216)
chr8 (233-340)||(3659877-3659984)
chr8 (295-346)||(7413091-7413142)
chr8 (233-280)||(34934370-34934417)
chr8 (235-340)||(3886835-3886940)
chr8 (235-340)||(9830607-9830712)
chr8 (296-346)||(10092315-10092365)
chr8 (238-346)||(5590222-5590330)
chr8 (232-342)||(38567124-38567236)
chr8 (295-346)||(7242683-7242734)
chr8 (295-346)||(7422097-7422148)
chr8 (295-346)||(42556142-42556193)
chr8 (295-346)||(43117408-43117459)
chr8 (297-338)||(1183884-1183925)
chr8 (301-346)||(4697985-4698030)
chr8 (236-340)||(6316877-6316981)
chr8 (295-340)||(28564944-28564989)
chr8 (295-340)||(28572567-28572612)
chr8 (298-346)||(197265-197313)
chr8 (298-346)||(312102-312150)
chr8 (236-276)||(1183823-1183863)
chr8 (235-346)||(4231220-4231330)
chr8 (301-336)||(10092433-10092468)
chr8 (295-346)||(21434899-21434950)
chr8 (295-346)||(22658395-22658446)
chr8 (299-346)||(38567306-38567353)
chr8 (235-273)||(7012337-7012375)
chr8 (301-346)||(3886716-3886761)
chr8 (301-346)||(5590109-5590154)
chr8 (301-346)||(7012516-7012561)
chr8 (235-280)||(11635758-11635803)
chr8 (301-346)||(22658282-22658327)
chr8 (295-340)||(36060417-36060462)
chr8 (301-346)||(36060536-36060581)
chr8 (301-346)||(42556029-42556074)
chr8 (301-346)||(43117528-43117573)
chr8 (235-338)||(1098057-1098160)
chr8 (297-340)||(32018030-32018073)
chr8 (295-346)||(41388065-41388116)
chr8 (304-346)||(25642781-25642823)
chr8 (301-346)||(1184001-1184046)
chr8 (301-346)||(2317240-2317285)
chr8 (309-346)||(7242571-7242608)
chr8 (301-346)||(21435018-21435063)
chr8 (301-346)||(28565063-28565108)
chr8 (301-346)||(28572686-28572731)
chr8 (301-346)||(41388184-41388229)
chr8 (301-345)||(41169877-41169921)
[»] scaffold0050 (2 HSPs)
scaffold0050 (238-346)||(19048-19156)
scaffold0050 (301-346)||(19224-19269)
[»] scaffold0014 (3 HSPs)
scaffold0014 (235-346)||(64933-65044)
scaffold0014 (301-346)||(65226-65271)
scaffold0014 (301-346)||(65112-65157)
[»] chr6 (27 HSPs)
chr6 (235-346)||(12698493-12698605)
chr6 (235-338)||(2660894-2660997)
chr6 (235-346)||(24635518-24635629)
chr6 (297-346)||(13405411-13405460)
chr6 (235-346)||(11450552-11450667)
chr6 (295-346)||(26468508-26468559)
chr6 (234-338)||(9079111-9079215)
chr6 (301-346)||(12996464-12996509)
chr6 (235-346)||(16461457-16461568)
chr6 (237-281)||(24130352-24130396)
chr6 (295-346)||(15469149-15469200)
chr6 (295-346)||(34023590-34023641)
chr6 (301-346)||(7021996-7022041)
chr6 (301-346)||(15469268-15469313)
chr6 (301-346)||(34023477-34023522)
chr6 (300-340)||(7021882-7021922)
chr6 (235-279)||(10290457-10290501)
chr6 (301-336)||(2660783-2660818)
chr6 (297-340)||(7536518-7536561)
chr6 (295-346)||(8560485-8560536)
chr6 (301-336)||(8560604-8560639)
chr6 (295-338)||(12996343-12996386)
chr6 (301-336)||(26468627-26468662)
chr6 (295-338)||(34127557-34127600)
chr6 (295-337)||(14883219-14883261)
chr6 (239-280)||(13405477-13405518)
chr6 (301-346)||(34127676-34127721)
[»] scaffold0131 (3 HSPs)
scaffold0131 (235-279)||(11166-11210)
scaffold0131 (295-338)||(11237-11280)
scaffold0131 (301-346)||(11356-11401)
[»] scaffold0002 (2 HSPs)
scaffold0002 (301-336)||(331950-331985)
scaffold0002 (295-338)||(331831-331874)
[»] scaffold0978 (1 HSPs)
scaffold0978 (309-346)||(1290-1327)
[»] scaffold0041 (1 HSPs)
scaffold0041 (297-346)||(82892-82941)
[»] scaffold0003 (1 HSPs)
scaffold0003 (297-346)||(303866-303915)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 9626036 - 9625826
Alignment:
Q  24 taatgttcacgtgcagattcaccatgaatttggcggattcatagtgtattatcgtgattttgacaaaagttcaaattcaagcatggaccaaagcatctca 123  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9626036 taatgttcacgtgtagattcaccataaatttggcggattcatagtgtattatcgtgattttgacaaaagttcaaattcaagcatggaccaaagcatctca 9625937  T
Q  124 attctcatcgaaatatccactccgagcctggaattttacgtaattaaacaatgaatttactaaatgttcccgaacctcgactgaaccaagggcacaatcc 223  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9625936 attctcatcgaaatatccactccaagactggaattttatgtaattaaacaatgaatttactaaatgttcccgaacctcgactgaaccaagggcacaatcc 9625837  T
Q  224 tcggccccaac 234  Q
    | |||||||||    
T  9625836 ttggccccaac 9625826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 34983277 - 34983386
Alignment:
Q  237 gtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| |||||||    
T  34983277 gtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattgaaaaatcaacgattataggtctattttgcgagattttatgcaatttt 34983376  T
Q  337 gtgttggttt 346  Q
    |||| |||||    
T  34983377 gtgtcggttt 34983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 22674899 - 22674788
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  22674899 cagtggcggagcccttcatgggctggggtggaccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 22674800  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  22674799 ttgtgtcggttt 22674788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 38763713 - 38763824
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||             ||||||||||||| ||||||| |||||||||||| |||||    
T  38763713 cagtggcggagcccttcatgggctgaggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctatttagcgagattttatgcaatt 38763812  T
Q  335 ttgtgttggttt 346  Q
    ||||||||||||    
T  38763813 ttgtgttggttt 38763824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 2249580 - 2249691
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||              |||| ||||||||||||||||||||||||||||| |||||    
T  2249580 cagtggcggagcccttcatgggctggggtgggccacgacccacccgaaaaaattaaaaaatcaatgattatagatctattttgcgagattttatgcaatt 2249679  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  2249680 ttgtgtcggttt 2249691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 6750165 - 6750054
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||   |||||||||| |||||    
T  6750165 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaatttaaaaatcaacgattataggtctatttattgagattttatgcaatt 6750066  T
Q  335 ttgtgttggttt 346  Q
    ||||||||||||    
T  6750065 ttgtgttggttt 6750054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 13616122 - 13616015
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  13616122 cagtggcggagtctttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 13616023  T
Q  335 ttgtgttg 342  Q
    ||||||||    
T  13616022 ttgtgttg 13616015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 23869662 - 23869773
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| |             ||||||||||||| |||||||||||||||||||| |||||    
T  23869662 cagtggcggagccctccatgggctggggtgggccacggcccaccccgaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 23869761  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  23869762 ttgtgtcggttt 23869773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 38527173 - 38527276
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| ||||||||| |||||||||| |||||    
T  38527173 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctattttgtgagattttatgcaatt 38527272  T
Q  335 ttgt 338  Q
    ||||    
T  38527273 ttgt 38527276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 44545888 - 44545777
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||             ||||||||||||| |||||||||||| |||||||||||||    
T  44545888 cagtggcggagcccttcatgggttggggtgggccacggtccacccggaaaaataaaaaaatcaacgattataggtctattttgcgatattttatacaatt 44545789  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  44545788 ttgtgtcggttt 44545777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 1115197 - 1115086
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||             ||||  ||||||| ||||||||||||||||||||||||||    
T  1115197 cagtggcggagcccttcatgggctggggtgggccacggtccactcggaaaaattaaaaaatcaattattataggtctattttgcgagattttatacaatt 1115098  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  1115097 ttgtgtcggttt 1115086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 28745655 - 28745546
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggccca--cccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatac 330  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  |||||             | ||||||||||| |||||||||||||||||||| |    
T  28745655 accagtggcggagcccttcatgggctggggtgggccacggcccacccccgggaaaattaaaaaattaacgattataggtctattttgcgagattttatgc 28745556  T
Q  331 aattttgtgt 340  Q
    ||||||||||    
T  28745555 aattttgtgt 28745546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 43471553 - 43471502
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  43471553 tcaacgattataggtctattttgcgagattttatacaattttgtgtcggttt 43471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 36436342 - 36436297
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccaccc 279  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  36436342 ccagtggcggagcccttcatgggctggggtgggccacggcccaccc 36436297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 1021230 - 1021116
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggccc-acccg-gnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttataca 331  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| |             ||||  ||||||| |||||||||||||||||||||||    
T  1021230 ccagtggcggagcccttcatgggctggggtgggccacggccccacccgagaaaaattaaaaaatcaattattataggtctattttgcgagattttataca 1021131  T
Q  332 attttgtgttggttt 346  Q
    ||||||||| |||||    
T  1021130 attttgtgtcggttt 1021116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 16194311 - 16194362
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  16194311 tcaacgattataagtctattttgcgagattttatgcaattttgtgttggttt 16194362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 17526123 - 17526080
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  17526123 aacgattatagatctattttgcgagattttatacaatttagtgt 17526080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 41699243 - 41699294
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  41699243 tcaacgattataggtatattttgcgagattttatgcaattttgtgttggttt 41699294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 42016562 - 42016613
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  42016562 tcaacgattataggtctattttgtgagattttatgcaattttgtgttggttt 42016613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 11935473 - 11935424
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  11935473 aacgattataagtctattttgcgagattttatacaattttgtgtcggttt 11935424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 26293221 - 26293270
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  26293221 aacgattataggtctattttgcgagattttatgcaattttgtgtcggttt 26293270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 44545709 - 44545664
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  44545709 attataggtctattttgcgagattttatacaattttatgttggttt 44545664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 3836431 - 3836388
Alignment:
Q  303 tatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  3836431 tatagatctattttacgagattttatacaattttgtgtcggttt 3836388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 11764853 - 11764904
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||||| |||||    
T  11764853 tcaacgattataggtctattttgcaagattttatacaactttgtgtcggttt 11764904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 19284029 - 19283986
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  19284029 tcaacgattataaatctattttgcgagattttatgcaattttgt 19283986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 1115018 - 1114977
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttg 342  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  1115018 attataggtctattttgcgagattttatacaattttatgttg 1114977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 7366210 - 7366255
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||    
T  7366210 tcaacgactataggtctattttgcgagattttatgcaattttgtgt 7366255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 7366329 - 7366374
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| ||||||||||||||||||||||||||||| ||| |||||    
T  7366329 attatacatctattttgcgagattttatacaattttatgtcggttt 7366374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 11764972 - 11765017
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  11764972 attataggtctattttgcgagattttatacaattttatgtcggttt 11765017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 13615943 - 13615898
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  13615943 attataggtctattttgcgagattttatacaattttatgtcggttt 13615898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 16194430 - 16194475
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  16194430 attataggtctattttgcgagattttatacaattttatgtcggttt 16194475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 26860642 - 26860597
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  26860642 attataggtctattttgcgagattttatacaattttatgtcggttt 26860597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 31392724 - 31392769
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  31392724 attataggtctattttgcgagattttatacaattttatgtcggttt 31392769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 34983454 - 34983499
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  34983454 attataggtctattttgcgagattttatacaattttatgtcggttt 34983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 38763892 - 38763937
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  38763892 attataggtctattttgcgagattttatacaattttatgtcggttt 38763937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 42016681 - 42016726
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  42016681 attataggtctattttgcgagattttatacaattttatgtcggttt 42016726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 3836319 - 3836284
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||| ||||||||||||||||||    
T  3836319 attatagatctattttgtgagattttatacaatttt 3836284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 12995025 - 12995068
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||    
T  12995025 tcaacgattataggtctaatttgcgagattttatgcaattttgt 12995068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 26860761 - 26860710
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||||| |||||||||||||||||||| |||||| |||| |||||    
T  26860761 tcaacaattataggtctattttgcgagattttatgcaatttcgtgtcggttt 26860710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 34494574 - 34494531
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||    
T  34494574 tcaacgattataggtctcttttgcgagattttatgcaattttgt 34494531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 36436162 - 36436127
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36436162 attataggtctattttgcgagattttatacaatttt 36436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 42473566 - 42473605
Alignment:
Q  241 cggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  42473566 cggagcccttcatgggctggggtgggccacggctcacccg 42473605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 2077562 - 2077600
Alignment:
Q  308 atctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  2077562 atctattttgcgagattctatacaattttgtgtcggttt 2077600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 1021048 - 1021003
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  1021048 attataggtctattttgagagattttatacaattttatgtcggttt 1021003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 2249759 - 2249804
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  2249759 attataggtctattttgcgagattttatacgattttatgtcggttt 2249804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 6749986 - 6749941
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||| ||||||||||||||| ||| |||||    
T  6749986 attataggtctattttgcgatattttatacaattttatgtcggttt 6749941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 11935355 - 11935310
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||||||| |||||||||||||| ||| |||||    
T  11935355 attataggtctattttgcgaggttttatacaattttatgtcggttt 11935310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 23869841 - 23869886
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| | |||||||||||||||||||||||||| ||| |||||    
T  23869841 attataggtatattttgcgagattttatacaattttatgtcggttt 23869886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 26293338 - 26293383
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  26293338 attataggtctattttgcgagattttatacgattttatgtcggttt 26293383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 36436279 - 36436230
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||  |||||||||||| ||||||| ||||||||||| |||||    
T  36436279 aacgattataagtctattttgcgatattttatgcaattttgtgtcggttt 36436230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 12994975 - 12995007
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggcc 268  Q
    |||||||||||||||| ||||||||||||||||    
T  12994975 agtggcggagcccttcatgggctggggtgggcc 12995007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 32099925 - 32099973
Alignment:
Q  232 aaccagtggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||| |||||||||| |||||| |||||||||||  ||||||||    
T  32099925 aaccagtggtggagcccttcatgggctagggtgggccacaacccacccg 32099973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 3631258 - 3631369
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  3631258 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 3631357  T
Q  335 ttgtgttggttt 346  Q
    ||||||||||||    
T  3631358 ttgtgttggttt 3631369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 26525389 - 26525277
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaat 333  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||| | ||||    
T  26525389 ccagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctattttgcgagattttttgcaat 26525290  T
Q  334 tttgtgttggttt 346  Q
    ||||||| |||||    
T  26525289 tttgtgtcggttt 26525277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 9737865 - 9737754
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             | ||||||||||| |||||||||||||||||||| |||||    
T  9737865 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaattaacgattataggtctattttgcgagattttatgcaatt 9737766  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  9737765 ttgtgtcggttt 9737754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 43358410 - 43358520
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattt 335  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| ||||||    
T  43358410 agtggcggagcccttcatgggctgaggtgggccacggcccacccggaaaaatgaaaaaatcaacgattataggtctattttgcgagattttatgcaattt 43358509  T
Q  336 tgtgttggttt 346  Q
    ||||| |||||    
T  43358510 tgtgtcggttt 43358520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 8074399 - 8074286
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnn-tcaacgattatagatctattttgcgagattttatacaa 332  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||              ||||||||||||| ||||||||||||||||||||||||    
T  8074399 ccagtggcggagcccttcatgggctggggtgggccacggcccacctggaaaattttaaaaaatcaacgattataggtctattttgcgagattttatacaa 8074300  T
Q  333 ttttgtgttggttt 346  Q
    |||||||| |||||    
T  8074299 ttttgtgtcggttt 8074286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 346
Target Start/End: Original strand, 16823133 - 16823241
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttg 337  Q
    |||||||||||||| |||||||||||||||||||||||| ||||             ||||||||||||| |||||||||||||||||||| ||||||||    
T  16823133 tggcggagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaattttg 16823232  T
Q  338 tgttggttt 346  Q
    ||| |||||    
T  16823233 tgtcggttt 16823241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 7440579 - 7440528
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7440579 tcaacgattatagatctattttgcgagattttatgcaattttgtgttggttt 7440528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 338
Target Start/End: Complemental strand, 13013415 - 13013310
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaa 332  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||| ||||||||||||||  |||    
T  13013415 accagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgagattttaagcaa 13013316  T
Q  333 ttttgt 338  Q
    ||||||    
T  13013315 ttttgt 13013310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 43348635 - 43348744
Alignment:
Q  237 gtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||             | ||||||||||| | |||||||||||||||||| |||||||    
T  43348635 gtggcggagcccttcatgggctggggcgggccacggcccacccggaaaaattaaaaaattaacgattataggtttattttgcgagattttatgcaatttt 43348734  T
Q  337 gtgttggttt 346  Q
    ||||||||||    
T  43348735 gtgttggttt 43348744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 25701580 - 25701476
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaat 333  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||             |||||||||||||||||||||||| |||||||||  |||    
T  25701580 ccagtggcggagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattatagatctattttgcaagattttatgtaat 25701481  T
Q  334 tttgt 338  Q
    |||||    
T  25701480 tttgt 25701476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 29390273 - 29390379
Alignment:
Q  240 gcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttgtg 339  Q
    |||||||||||| |||||||||||||||||||||||||| ||             ||||||||||||| | |||||| ||||||||||| ||||||||||    
T  29390273 gcggagcccttcatgggctggggtgggccacggcccacctggaaaaattaaaaaatcaacgattataggtgtattttacgagattttatgcaattttgtg 29390372  T
Q  340 ttggttt 346  Q
    |||||||    
T  29390373 ttggttt 29390379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 15374174 - 15374225
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  15374174 tcaacgattataggtctattttgcgagattttatgcaattttgtgtcggttt 15374225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 19577338 - 19577229
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||             | |||||||||||||||||||||| | |||||||||||||    
T  19577338 cagtggcggagcccttcatgggctaaggtgggccacggcccacccggaaaaataaaaaatt-aacgattatagatctattttgcaacattttatacaatt 19577240  T
Q  335 ttgtgttggtt 345  Q
    |||||| ||||    
T  19577239 ttgtgtcggtt 19577229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 28662117 - 28662227
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattt 335  Q
    |||||||||||||||  |||||||||||||||||||||||||||||             | ||| |  ||||||||||||| ||||||||||||||||||    
T  28662117 agtggcggagccctttatgggctggggtgggccacggcccacccggaaaaattaaaaaattaaccaccatagatctattttacgagattttatacaattt 28662216  T
Q  336 tgtgttggttt 346  Q
    |||||| ||||    
T  28662217 tgtgttagttt 28662227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 41084738 - 41084635
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||  || ||||||||             ||||||||||||| ||||||||||||||||||||| ||||    
T  41084738 cagtggcggagcccttcatgggctggggtgggcc--ggtccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatagaatt 41084641  T
Q  335 ttgtgt 340  Q
    ||||||    
T  41084640 ttgtgt 41084635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 30772878 - 30772981
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||              ||||||||||||| |||||||||| ||||||||| |||||    
T  30772878 cagtggcggagcccttcatgggttggggtgggccacggctcacccgaaaaaattaaaaaatcaacgattataggtctattttgcaagattttatgcaatt 30772977  T
Q  335 ttgt 338  Q
    ||||    
T  30772978 ttgt 30772981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 9596264 - 9596213
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||| |||||    
T  9596264 tcaacgattatatgtctattttgcgagattttatgcaattttgtgtcggttt 9596213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 30773057 - 30773092
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  30773057 attatagatctattttgcgagattttatacaatttt 30773092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 26784911 - 26784957
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||    
T  26784911 cagtggcggagcccttcatgggcttaggtgggccacggcccacccgg 26784957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 9596145 - 9596100
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||    
T  9596145 attatagatctattttgtgagattttatacaattttatgtcggttt 9596100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 26525209 - 26525164
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  26525209 attataggtctattttgcgagattttatacaattttatgtcggttt 26525164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 32304632 - 32304587
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  32304632 attataggtctattttgcgagattttatacaattttatgtcggttt 32304587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 37042643 - 37042611
Alignment:
Q  304 atagatctattttgcgagattttatacaatttt 336  Q
    |||||||||||||||||||||||||||||||||    
T  37042643 atagatctattttgcgagattttatacaatttt 37042611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 3631437 - 3631472
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3631437 attataggtctattttgcgagattttatacaatttt 3631472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 7440458 - 7440415
Alignment:
Q  303 tatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||    
T  7440458 tataggtctattttgcgagattttatacaattttatgtcggttt 7440415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 13084741 - 13084698
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||    
T  13084741 tcaacgattataggtctaatttgcgagattttatgcaattttgt 13084698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 30050188 - 30050145
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||    
T  30050188 aacgattataggtctattttacgatattttatacaattttgtgt 30050145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 32304751 - 32304700
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||  |||||||| ||||||||||| ||||||||||| |||||    
T  32304751 tcaacgattataagtctattttacgagattttatgcaattttgtgtcggttt 32304700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 6229109 - 6229071
Alignment:
Q  243 gagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  6229109 gagcccttcatgggctggggtgggccacagcccacccgg 6229071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 8074218 - 8074184
Alignment:
Q  301 attatagatctattttgcgagattttatacaattt 335  Q
    |||||| ||||||||||||||||||||||||||||    
T  8074218 attataaatctattttgcgagattttatacaattt 8074184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 20117489 - 20117523
Alignment:
Q  308 atctattttgcgagattttatacaattttgtgttg 342  Q
    ||||||| |||||||||||||||||||||||||||    
T  20117489 atctattgtgcgagattttatacaattttgtgttg 20117523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 335
Target Start/End: Complemental strand, 25701400 - 25701366
Alignment:
Q  301 attatagatctattttgcgagattttatacaattt 335  Q
    ||||||| |||||||||||||||||||||||||||    
T  25701400 attataggtctattttgcgagattttatacaattt 25701366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 36244281 - 36244239
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtg 339  Q
    |||||| |||||||||||||| ||||||||| |||||||||||    
T  36244281 aacgatcatagatctattttgtgagattttaaacaattttgtg 36244239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 9596325 - 9596280
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccaccc 279  Q
    |||| |||||||||||||   |||||||||||||||||||||||||    
T  9596325 ccagcggcggagcccttcaaaggctggggtgggccacggcccaccc 9596280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 10925687 - 10925732
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||| |||||||||||||| ||| ||| |||||    
T  10925687 attatagatctattttgtgagattttatacaaatttatgtcggttt 10925732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 16823309 - 16823354
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||  ||||| ||| |||||    
T  16823309 attatagatctattttgcgagattttatatgattttatgtcggttt 16823354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 20071310 - 20071261
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||| |||||    
T  20071310 aacgattaaagatttattttgtgagattttatacaattttatgtcggttt 20071261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 20487033 - 20487082
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| |||| | |||||||| ||||||||||||||||||||| |||||    
T  20487033 aacgatcataggtatattttgcaagattttatacaattttgtgtcggttt 20487082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 26297167 - 26297122
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||    
T  26297167 cagtggcggagcccttcatgagctgggatgggccacggtccacccg 26297122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 43348812 - 43348857
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  43348812 attataggtctattttgcgagattttatacgattttatgtcggttt 43348857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 58)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 6755827 - 6755935
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaat 333  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| ||||    
T  6755827 ccagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaat 6755926  T
Q  334 tttgtgttg 342  Q
    |||||||||    
T  6755927 tttgtgttg 6755935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 11651127 - 11651014
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaa 332  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||             ||||||||||||| |||||||||||||||||||| |||    
T  11651127 accagtggcggagcccttcatgggctggggtgggccacggcccgcccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaa 11651028  T
Q  333 ttttgtgttggttt 346  Q
    |||||||| |||||    
T  11651027 ttttgtgtcggttt 11651014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 40228590 - 40228478
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccgg-nnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaat 333  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||              ||||||||||||| |||||||||||||||||||| ||||    
T  40228590 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaatttaaaaaatcaacgattataggtctattttgcgagattttatgcaat 40228491  T
Q  334 tttgtgttggttt 346  Q
    ||||||| |||||    
T  40228490 tttgtgtcggttt 40228478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 2655067 - 2654966
Alignment:
Q  237 gtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||| ||||||||||||||||||||||||||||              |||||||||||||||||| ||||||||||||||| |||||||    
T  2655067 gtggcggagcccttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacgattatagatctagtttgcgagattttatgcaatttt 2654968  T
Q  337 gt 338  Q
    ||    
T  2654967 gt 2654966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 13233229 - 13233332
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||             |||||||||||||||||||||||||| ||||||| |||||    
T  13233229 cagtggcggagtccttcataggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattatagatctattttgcgatattttatgcaatt 13233328  T
Q  335 ttgt 338  Q
    ||||    
T  13233329 ttgt 13233332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 44817708 - 44817597
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||| ||||| |||||||| ||| ||||||| |||||    
T  44817708 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgactataggtctatttttcgaaattttatgcaatt 44817609  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  44817608 ttgtgtcggttt 44817597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 9046178 - 9046135
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9046178 aacgattatagatctattttgcgagattttatacaattttgtgt 9046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 13613191 - 13613140
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  13613191 tcaacgattataggtctattttgcgagattttatgcaattttgtgttggttt 13613140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 27270353 - 27270463
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||             |||| |||||||  ||||||||||||||||||||||||||    
T  27270353 cagtggcggagcccttcatgggctggggtgggccacagcccacccgg-aaaattaaaaaatcaatgattataagtctattttgcgagattttatacaatt 27270451  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  27270452 ttgtgtcggttt 27270463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 36955109 - 36955058
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  36955109 tcaacgattataggtctattttgcgagattttatgcaattttgtgttggttt 36955058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 36584423 - 36584469
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  36584423 cagtggcggagcccttcatgggctggggtgggccacggcccacccgg 36584469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 44134493 - 44134594
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||             ||||||||||||| ||||||||| |||||||||| |||||    
T  44134493 cagtggcggagcccttcatgggctggggtgggccacggtccacccggaaaaattaaaaaatcaacgattataggtctattttgtgagattttatgcaatt 44134592  T
Q  335 tt 336  Q
    ||    
T  44134593 tt 44134594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 51001475 - 51001521
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  51001475 cagtggcggagcccttcatgggctggggtgggccacggcccacccgg 51001521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 18491186 - 18491297
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||             ||||||||||||| ||||||||| ||||||||||  ||||    
T  18491186 cagtggcggagcccttcatgggctggggtgggccacggcccactcggaaaaattaaaaaatcaacgattataggtctattttgtgagattttatgtaatt 18491285  T
Q  335 ttgtgttggttt 346  Q
    || ||| |||||    
T  18491286 ttatgtcggttt 18491297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 19653803 - 19653692
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |             ||||||||||||| |||||||||  ||||||||| |||||    
T  19653803 cagtggcggagcccttcatgggctggggtgggccacggcccacaccgaaaaataaaaaaatcaacgattataggtctattttgttagattttatgcaatt 19653704  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  19653703 ttgtgtcggttt 19653692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 31664323 - 31664276
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31664323 ccagtggcggagcccttcatgggatggggtgggccacggcccacccgg 31664276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 43564477 - 43564528
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||    
T  43564477 tcaacgattataggtctattttgcgatattttatgcaattttgtgttggttt 43564528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 50767093 - 50767144
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  50767093 tcaacgattataggtctattttgcgagattttatacaattttatgtcggttt 50767144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 54795828 - 54795777
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  54795828 tcaacgattataggtctattttgcaagattttatacaattttgtgtcggttt 54795777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 4632803 - 4632753
Alignment:
Q  296 caacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  4632803 caacgattataagtctattttgcgagattttatacaattttgtgttagttt 4632753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 38141714 - 38141613
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnn-tcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    |||||||||||||| |||||||||| ||||||||||||||||||              ||||||||||||| |||||||||||||||||||| |||||||    
T  38141714 tggcggagcccttcatgggctggggagggccacggcccacccggaaaaattaaaaaaatcaacgattataggtctattttgcgagattttatgcaatttt 38141615  T
Q  337 gt 338  Q
    ||    
T  38141614 gt 38141613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 31581909 - 31581798
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    |||||||| |||||||| |||||||||||||||||||| |||||| |              |||||||||||| |||||||||| ||||||||| |||||    
T  31581909 cagtggcgaagcccttcatgggctggggtgggccacggtccaccccgaaaaattaaaaaaacaacgattataggtctattttgctagattttatgcaatt 31581810  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  31581809 ttgtgtcggttt 31581798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 44745748 - 44745638
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattt 335  Q
    |||||||||||| ||  |||||||||||||||||||||||| || |             ||||||||||||| |||||||||| ||||||||| ||||||    
T  44745748 agtggcggagcctttaatgggctggggtgggccacggcccatccagaaaaattaaaaaatcaacgattataggtctattttgcaagattttatgcaattt 44745649  T
Q  336 tgtgttggttt 346  Q
    ||||| |||||    
T  44745648 tgtgtcggttt 44745638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 22647109 - 22647151
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggccca 276  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  22647109 ccagtggcggagcccttcatgggctgaggtgggccacggccca 22647151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 10096436 - 10096391
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  10096436 attataggtctattttgcgagattttatacaattttatgtcggttt 10096391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 13233408 - 13233453
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  13233408 attataggtctattttgcgagattttatacaattttatgtcggttt 13233453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 18735241 - 18735278
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  18735241 aacgattataggtctattttgcgagattttatacaatt 18735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 22647289 - 22647334
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||||    
T  22647289 attataggtctattttgcgagattttatacaattttatgtttgttt 22647334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 36584601 - 36584646
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  36584601 attataggtctattttgcgagattttatacaattttatgtcggttt 36584646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 41832555 - 41832600
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  41832555 attataggtctattttgcgagattttatacaattttatgtcggttt 41832600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 44134671 - 44134716
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  44134671 attataggtctattttgcgagattttatacaattttatgtcggttt 44134716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 16925106 - 16925208
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||||             ||||||||||||| |||| ||||||||| ||||| |||||    
T  16925106 cagtggcggagcccttcatgggc-ggggtgggccacggtccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgagactttatgcaatt 16925204  T
Q  335 ttgt 338  Q
    ||||    
T  16925205 ttgt 16925208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 133414 - 133461
Alignment:
Q  299 cgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||| | ||||||| ||||||||||| ||||||||||||||||    
T  133414 cgattataggtatattttgtgagattttatataattttgtgttggttt 133461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 10096555 - 10096504
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |  |||||||||||||||||| |||||||||| |||||    
T  10096555 tcaacgattataggttcattttgcgagattttatataattttgtgtcggttt 10096504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 12700548 - 12700513
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  12700548 attataggtctattttgcgagattttatacaatttt 12700513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 13857611 - 13857654
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccac 277  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||    
T  13857611 ccagtggcgaagcccttcatgggctagggtgggccacggcccac 13857654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 13857687 - 13857722
Alignment:
Q  311 tattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13857687 tattttgtgagattttatacaattttgtgttggttt 13857722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 18491367 - 18491410
Alignment:
Q  303 tatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||    
T  18491367 tataggtctattttgcgagattttatacaattttatgtcggttt 18491410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 31581730 - 31581695
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31581730 attataggtctattttgcgagattttatacaatttt 31581695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 36954990 - 36954955
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36954990 attataggtctattttgcgagattttatacaatttt 36954955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 45670019 - 45670070
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| | ||||||||||||||||||  |||||||||| |||||    
T  45670019 tcaacgattataggtttattttgcgagattttatgtaattttgtgtcggttt 45670070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 10393895 - 10393933
Alignment:
Q  308 atctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  10393895 atctattttgcgagattttatataattttgtgtcggttt 10393933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 13869141 - 13869183
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggccca 276  Q
    |||||||||||||||||| |||| | |||||||||||||||||    
T  13869141 ccagtggcggagcccttcatgggttagggtgggccacggccca 13869183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 52581455 - 52581500
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  52581455 cagtggcggagcccttcatgggct-gggtgggccacggcccatccgg 52581500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 6756007 - 6756052
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  6756007 attataggtctattttgcgagattttatactattttatgtcggttt 6756052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 7638848 - 7638811
Alignment:
Q  303 tatagatctattttgcgagattttatacaattttgtgt 340  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  7638848 tataaatctattttgcaagattttatacaattttgtgt 7638811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 12700667 - 12700622
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||| | |||||||||||| ||||| |||||||||||    
T  12700667 tcaacgattataggtttattttgcgagactttatgcaattttgtgt 12700622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 13613072 - 13613027
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||| ||||||||||||||||||| ||| |||||    
T  13613072 attataggtctattttccgagattttatacaattttatgtcggttt 13613027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 18668990 - 18669027
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  18668990 aacgattataggtctactttgcgagattttatacaatt 18669027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 18714841 - 18714878
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  18714841 aacgattataggtctactttgcgagattttatacaatt 18714878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 36584488 - 36584533
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| | |||||||||||||||||| |||||||||||| ||||    
T  36584488 attataggtatattttgcgagattttatgcaattttgtgttagttt 36584533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 36801946 - 36801909
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  36801946 tctattttgcgagattttatataattttgtgtcggttt 36801909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 36955169 - 36955136
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggcc 268  Q
    ||||||||||||||||| ||||||||||||||||    
T  36955169 cagtggcggagcccttcatgggctggggtgggcc 36955136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 38141537 - 38141492
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  38141537 attataggtctattttgtgagattttatacaattttatgtcggttt 38141492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 43564604 - 43564641
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  43564604 tctattttgcgagattttatacaattttatgtcggttt 43564641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 44745562 - 44745525
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  44745562 tctattttgcgagattttatacaattttatgtcggttt 44745525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 44817530 - 44817485
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||| ||||||||||||||||||||| ||| |||||    
T  44817530 attataggtctattctgcgagattttatacaattttatgtcggttt 44817485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 4632681 - 4632645
Alignment:
Q  304 atagatctattttgcgagattttatacaattttgtgt 340  Q
    |||| |||||||||||||||| |||||||||||||||    
T  4632681 ataggtctattttgcgagattatatacaattttgtgt 4632645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 26873702 - 26873813
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             |||| |||||||| ||||||||||||||||||||||||||    
T  26873702 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaatgattataggtctattttgcgagattttatacaatt 26873801  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  26873802 ttgtgtcggttt 26873813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 44468177 - 44468069
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttg 337  Q
    |||||||||||||| | |||||||||||||||||||||||| ||             |||||||||||||||||||||||||||||||||| ||||||||    
T  44468177 tggcggagcccttcataggctggggtgggccacggcccacctggaaaaattaaaaaatcaacgattatagatctattttgcgagattttatgcaattttg 44468078  T
Q  338 tgttggttt 346  Q
    |||||||||    
T  44468077 tgttggttt 44468069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 46027679 - 46027790
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  46027679 cagtggcggagcccttcgtgggctggggtgggccacggtccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 46027778  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  46027779 ttgtgtcggttt 46027790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 23562806 - 23562701
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| || |||||||||||||| |||||||| ||             ||||||||||||||||||||||||||||||||||||||||    
T  23562806 cagtggcggagcccttcatgagctggggtgggccatggcccacctggaaaaattaaaaaatcaacgattatagatctattttgcgagattttatacaatt 23562707  T
Q  335 ttgtgt 340  Q
    ||||||    
T  23562706 ttgtgt 23562701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 36358469 - 36358366
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| ||             |||||||||||||||||||||||||| ||||||| |||||    
T  36358469 cagtggcggagcccttcatgggctggggtgggccacggtccacctggaaaaattaaaaaatcaacgattatagatctattttgcgacattttatgcaatt 36358370  T
Q  335 ttgt 338  Q
    ||||    
T  36358369 ttgt 36358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 44724222 - 44724111
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||              |||| ||||||| | ||||||| ||||||||||||||||    
T  44724222 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaaccaactattataggtttattttgagagattttatacaatt 44724123  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  44724122 ttgtgtcggttt 44724111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 9624055 - 9624106
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  9624055 tcaacgattataggtctattttgcgagattttatgcaattttgtgttggttt 9624106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 45350050 - 45350161
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaat 333  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||||             ||||||||||||  |||||||||||||||||||| ||||    
T  45350050 ccagtggcggagcccttcatgggctggg-tgggccacggtccacccggaaaaattaaaaaatcaacgattataagtctattttgcgagattttatgcaat 45350148  T
Q  334 tttgtgttggttt 346  Q
    ||||||| |||||    
T  45350149 tttgtgtcggttt 45350161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 17166869 - 17166968
Alignment:
Q  239 ggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||| ||||||||||||||||||||||||||| |             ||||| ||||||| |||||||||||||||||||| |||||||||    
T  17166869 ggcggagcccttcatgggctggggtgggccacggcccacccagaaaaattaaaaaatcaacaattatagttctattttgcgagattttatgcaattttgt 17166968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 36675646 - 36675535
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||              | || |||||||||||||||||| |||||||||| |||||    
T  36675646 cagtggcggagcccttcatgggctggggtgggccacggcccatccgaaaaaattaaaaaattaatgattatagatctattttgtgagattttatgcaatt 36675547  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  36675546 ttgtgtcggttt 36675535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 44142821 - 44142872
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  44142821 tcaacgattataggtatattttgcgagattttatgcaattttgtgttggttt 44142872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 44468001 - 44467956
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  44468001 attataggtctattttgcgagattttatacaattttatgttggttt 44467956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 43859090 - 43859193
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||             ||||||||||||| || | ||||||||||||||| |||||    
T  43859090 cagtggcggagcccttcatgggctagggtgggccacggcccacctggaaaaattaaaaaatcaacgattataggtcgaatttgcgagattttatgcaatt 43859189  T
Q  335 ttgt 338  Q
    ||||    
T  43859190 ttgt 43859193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 22723875 - 22723824
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||| |||||    
T  22723875 tcaacgattataggtctactttgcgagattttatgcaattttgtgtcggttt 22723824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 31065722 - 31065671
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||| |||||    
T  31065722 tcaacgattataggtctattttacgagattttatgcaattttgtgtcggttt 31065671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 31428796 - 31428847
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||    
T  31428796 tcaacgattataggtctattttgcaagattttatgcaattttgtgtcggttt 31428847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 31932010 - 31931959
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  31932010 tcaacgattataggtctattttgcgagattttatacgattttatgtcggttt 31931959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 36358290 - 36358255
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  36358290 attatagatctattttgcgagattttatacaatttt 36358255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 17167045 - 17167090
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  17167045 attataggtctattttgcgagattttatacaattttatgtcggttt 17167090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 22566665 - 22566628
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||| |||||    
T  22566665 tctattttgcgagattttatacaattttgtgtcggttt 22566628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 22723756 - 22723711
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  22723756 attataggtctattttgcgagattttatacaattttatgtcggttt 22723711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 23469376 - 23469331
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  23469376 attataggtctattttgcgagattttatacaattttatgtcggttt 23469331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 29075165 - 29075120
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  29075165 attataggtctattttgcgagattttatacaattttatgtcggttt 29075120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 29662932 - 29662977
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  29662932 cagtggcggagcccttcatgggctagggtgggctacggcccacccg 29662977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 31065603 - 31065558
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  31065603 attataggtctattttgcgagattttatacaattttatgtcggttt 31065558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 31428915 - 31428960
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||||    
T  31428915 attatagatctattttgcgagattttataaaattttatgtcggttt 31428960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 36675467 - 36675422
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  36675467 attataggtctattttgcgagattttatacaattttatgtcggttt 36675422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 42241909 - 42241864
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||    
T  42241909 attatagatctattttacgagattttatacaattttatgtcggttt 42241864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 44142939 - 44142984
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  44142939 attataggtctattttgcgagattttatacaattttatgtcggttt 44142984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 44724043 - 44723998
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  44724043 attataggtctattttgcgagattttatacaattttatgtcggttt 44723998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 8461760 - 8461799
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  8461760 aacgattataggtctattttgcgatattttatacaatttt 8461799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 16834433 - 16834390
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||    
T  16834433 tggcggagcccttcatgggctggggtgggccatggcccatccgg 16834390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 18104417 - 18104367
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  18104417 tcaacgattataggtctattttgcgaga-tttatgcaattttgtgtcggttt 18104367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 19692467 - 19692510
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacc 278  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||    
T  19692467 cagtggcggagcccttcatgggctggggtggaccacggtccacc 19692510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 29075284 - 29075233
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||| |||||||||||| ||||||| ||||||||||| |||||    
T  29075284 tcaacgactataggtctattttgcgatattttatgcaattttgtgtcggttt 29075233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 40055769 - 40055804
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  40055769 attataggtctattttgcgagattttatacaatttt 40055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 45350229 - 45350264
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45350229 attataggtctattttgcgagattttatacaatttt 45350264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 46027858 - 46027893
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  46027858 attataggtctattttgcgagattttatacaatttt 46027893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 8727725 - 8727766
Alignment:
Q  239 ggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||| |||||| |||||||||||| ||||||||    
T  8727725 ggcggagcccttcatgggctagggtgggccacgacccacccg 8727766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 9624174 - 9624219
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||| ||||||||||||||||||| ||| |||||    
T  9624174 attataggtctattttccgagattttatacaattttatgtcggttt 9624219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 23469481 - 23469444
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  23469481 tctattttgcgagattttatgcaattttgtgtcggttt 23469444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 29502229 - 29502180
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| |||| | |||||||| ||||||||| |||||||||||||||||    
T  29502229 aacgataataggtatattttgcaagattttattcaattttgtgttggttt 29502180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 29502287 - 29502246
Alignment:
Q  239 ggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||| |||||| ||||||||||| |||||||||    
T  29502287 ggcggagcccttcatgggctagggtgggccacagcccacccg 29502246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 30781072 - 30781121
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| ||||||||| ||||| | ||||||||||||||||||| |||||    
T  30781072 aacgatcatagatctactttgcaaaattttatacaattttgtgtaggttt 30781121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 39976499 - 39976544
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||| |||||||||||||| ||| ||| |||||    
T  39976499 attatagatctattttgtgagattttatacaaatttatgtcggttt 39976544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 40883343 - 40883392
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||| |||||| |||||||||||||||| |||||||| |||||    
T  40883343 aacgactataggtctattatgcgagattttatacacttttgtgtcggttt 40883392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 9014391 - 9014427
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacg 271  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  9014391 cagtggcggagcccttcatgggctgtggtgggccacg 9014427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 29126203 - 29126092
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  29126203 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 29126104  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  29126103 ttgtgtcggttt 29126092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 52201981 - 52202092
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||    
T  52201981 cagtggcggagcccttcatgggctggggtgggtcacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatacaatt 52202080  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  52202081 ttgtgtcggttt 52202092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 18163717 - 18163820
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  18163717 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctattttgcgagattttattcaatt 18163816  T
Q  335 ttgt 338  Q
    ||||    
T  18163817 ttgt 18163820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 13595033 - 13594922
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    |||||||||||||| || |||||||||||||||||||||||||| |              |||||||||||||||||||||||||||||||||| |||||    
T  13595033 cagtggcggagcccgtcatgggctggggtgggccacggcccacctgaaaaaattaaaaaatcaacgattatagatctattttgcgagattttatgcaatt 13594934  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  13594933 ttgtgtcggttt 13594922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 7160450 - 7160345
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||  ||||    
T  7160450 cagtggcggagcctttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgtaatt 7160351  T
Q  335 ttgtgt 340  Q
    ||||||    
T  7160350 ttgtgt 7160345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 36633486 - 36633589
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||             ||||||||||||| ||||||||| ||||||||||||||||    
T  36633486 cagtggcggagcccttcatgggctggggtgggccacgacccatccggaaaaattaaaaaatcaacgattataggtctattttgtgagattttatacaatt 36633585  T
Q  335 ttgt 338  Q
    ||||    
T  36633586 ttgt 36633589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 50527793 - 50527690
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||              |||||| |||||| |||||||||||||||||||| |||||    
T  50527793 cagtggcggagcccttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacgtttatagttctattttgcgagattttatgcaatt 50527694  T
Q  335 ttgt 338  Q
    ||||    
T  50527693 ttgt 50527690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 52571584 - 52571481
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||| ||||||| ||||||| |||||    
T  52571584 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgatattttatgcaatt 52571485  T
Q  335 ttgt 338  Q
    ||||    
T  52571484 ttgt 52571481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 4618210 - 4618261
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  4618210 tcaacgattatagatctattttgcaagattttatacaattttgtgtcggttt 4618261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 12251667 - 12251562
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||||             ||||||||||||| ||||||||| ||||||||||| ||||    
T  12251667 cagtggcagagcccttcatgggctggggtggaccacggcccacccggaaaaatttaaaaatcaacgattataggtctattttgtgagattttatataatt 12251568  T
Q  335 ttgtgt 340  Q
    ||||||    
T  12251567 ttgtgt 12251562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 328
Target Start/End: Complemental strand, 16908968 - 16908875
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttat 328  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||    
T  16908968 cagtggcagagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaattcaacgattataggtctattttgcgagattttat 16908875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 346
Target Start/End: Original strand, 22729222 - 22729330
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttg 337  Q
    |||||||||||||  |||||||||||||||||||||||||||||             ||||||| ||||| |||||||| ||||||||||| ||||||||    
T  22729222 tggcggagcccttaatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgactataggtctatttttcgagattttatgcaattttg 22729321  T
Q  338 tgttggttt 346  Q
    ||| |||||    
T  22729322 tgtcggttt 22729330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 28952551 - 28952440
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||  ||||| ||             ||||||||||| | |||||||||||||||||||| |||||    
T  28952551 cagtggcggagcccttcatgggctggggtgggccacgatccacctggaaaaattaaaaaatcaacgattatgggtctattttgcgagattttatgcaatt 28952452  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  28952451 ttgtgtcggttt 28952440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 49169792 - 49169903
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||  ||||||||||||||||||  ||||||| |             ||||||||||||| |||||||||||| |||||||||||||    
T  49169792 cagtggcggagccctttatgggctggggtgggccacaacccacccagaaaagtaaaaaaatcaacgattataggtctattttgcgaaattttatacaatt 49169891  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  49169892 ttgtgtcggttt 49169903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 1093031 - 1092926
Alignment:
Q  241 cggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||| ||||||| |||||||||||||||||||||             ||||||| ||||  |||||||||||||||||||| |||||||||||    
T  1093031 cggagcccttcatgggctgaggtgggccacggcccacccggaaaaattaaaaaatcaacgactataagtctattttgcgagattttatgcaattttgtgt 1092932  T
Q  341 tggttt 346  Q
     |||||    
T  1092931 gggttt 1092926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 35083971 - 35084016
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  35083971 attataggtctattttgcgagattttatacaattttatgttggttt 35084016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 44205471 - 44205512
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  44205471 tcaacgattatagatctattttgcgagattttatgcaatttt 44205512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 45045388 - 45045433
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  45045388 attataggtctattttgcgagattttatacaattttatgttggttt 45045433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 49657192 - 49657147
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  49657192 attatagatctattttgcgagattttatacaattttatgtcggttt 49657147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 52499287 - 52499246
Alignment:
Q  305 tagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  52499287 tagatttattttgcgagattttatacaattttgtgttggttt 52499246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 1092858 - 1092823
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  1092858 attatagatctattttgcgagattttatacaatttt 1092823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 44254700 - 44254649
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  44254700 tcaatgattatatatctattttgcgagattttatgcaattttgtgtcggttt 44254649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 11232249 - 11232203
Alignment:
Q  300 gattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||    
T  11232249 gattataggtctattttgcgagattttatgcaattttgtgtcggttt 11232203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 11232135 - 11232090
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  11232135 attataggtctattttgcgagattttatacaattttatgtcggttt 11232090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 13594854 - 13594809
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  13594854 attataggtctattttgcgagattttatacaattttatgtcggttt 13594809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 21259534 - 21259489
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||| ||||||||| |||||||||| |||||||||||    
T  21259534 tcaacgattataggtctattttgtgagattttatgcaattttgtgt 21259489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 22729398 - 22729443
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  22729398 attataggtctattttgcgagattttatacaattttatgtcggttt 22729443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 25246324 - 25246283
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  25246324 tcaacgtttataggtctattttgcgagattttatacaatttt 25246283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 32270900 - 32270855
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  32270900 attataggtctattttgcgagattttatacaattttatgtcggttt 32270855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 44254581 - 44254536
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  44254581 attataggtctattttgcgagattttatacaattttatgtcggttt 44254536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 50527614 - 50527569
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  50527614 attataggtctattttgcgagattttatacaattttatgtcggttt 50527569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 52202160 - 52202205
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||    
T  52202160 attatagatctattttacgagattttatacaattttatgtcggttt 52202205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 7441737 - 7441702
Alignment:
Q  240 gcggagcccttcctgggctggggtgggccacggccc 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  7441737 gcggagcccttcatgggctggggtgggccacggccc 7441702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 27742545 - 27742596
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| |||||| ||||||||| |||||||||| ||||||||||| |||||    
T  27742545 tcaacgcttataggtctattttgagagattttatgcaattttgtgtcggttt 27742596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 32271074 - 32271031
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    |||||||||| ||| |||||||||||||||||| ||||||||||    
T  32271074 tggcggagcctttcatgggctggggtgggccacagcccacccgg 32271031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 45045268 - 45045319
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||| |||||||||| ||||||||||||||||| | |||||| |||||||||    
T  45045268 tcaatgattatagatttattttgcgagattttaaataattttttgttggttt 45045319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 2618883 - 2618925
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggccca 276  Q
    |||||||||||||||||| |||| || ||||||||||||||||    
T  2618883 ccagtggcggagcccttcatgggttgaggtgggccacggccca 2618925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 16908799 - 16908754
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||| ||||||||||||||||| ||| |||||    
T  16908799 attataggtctattttgctagattttatacaattttatgtcggttt 16908754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 28952364 - 28952327
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  28952364 tctattttgcgagattttatacaattttatgtcggttt 28952327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 29126024 - 29125979
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||||    
T  29126024 attataggtctattttgcgagattttatacgattttatgtcggttt 29125979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 32271005 - 32270968
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  32271005 tctattttgcgagattttatgcaattttgtgtcggttt 32270968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 34660807 - 34660856
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| |||| |||||||| |||||||||||| |||||||||| |||||    
T  34660807 aacgatcataggtctattttacgagattttatataattttgtgtcggttt 34660856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 36633665 - 36633710
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||||||||| |||||||||||| ||| |||||    
T  36633665 attataggtctattttgcgagatattatacaattttatgtcggttt 36633710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 919868 - 919757
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||             |||||||||||||||||||||||||||||||||| |||||    
T  919868 cagtgacggagcccttcatgggctggggtgggccacggcccatccggaaaaatttaaaaatcaacgattatagatctattttgcgagattttatgcaatt 919769  T
Q  335 ttgtgttggttt 346  Q
    ||||||||||||    
T  919768 ttgtgttggttt 919757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 6849752 - 6849855
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||| |||||||||||||||||||||    
T  6849752 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgagattttatacaatt 6849851  T
Q  335 ttgt 338  Q
    ||||    
T  6849852 ttgt 6849855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 16693107 - 16692996
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||||||| ||||||||||| |||||    
T  16693107 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttacgagattttatgcaatt 16693008  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  16693007 ttgtgtcggttt 16692996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 346
Target Start/End: Complemental strand, 44052620 - 44052506
Alignment:
Q  232 aaccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttataca 331  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||             ||||||||||||| ||||||||||||||||||||  |    
T  44052620 aaccggtggcggagcccttcatgggctggggtgggccacggctcacccggaaaaatttaaaaatcaacgattataggtctattttgcgagattttatgta 44052521  T
Q  332 attttgtgttggttt 346  Q
    |||||||||||||||    
T  44052520 attttgtgttggttt 44052506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 8530082 - 8530187
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||              ||||||||||||| |||||||||||||||||||| |||||    
T  8530082 cagtggcggagcccttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 8530181  T
Q  335 ttgtgt 340  Q
    ||||||    
T  8530182 ttgtgt 8530187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 33012217 - 33012104
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaa 332  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| ||||||||| |||||||||| |||    
T  33012217 accaatggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctattttgtgagattttatgcaa 33012118  T
Q  333 ttttgtgttggttt 346  Q
    |||||||| |||||    
T  33012117 ttttgtgtcggttt 33012104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 336
Target Start/End: Complemental strand, 17285452 - 17285351
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||             ||||||||||||| |||| ||||||||||||||| |||||    
T  17285452 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgagattttatgcaatt 17285353  T
Q  335 tt 336  Q
    ||    
T  17285352 tt 17285351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 29169941 - 29170044
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||             ||||||||||||| |||| ||||||||||||||| |||||    
T  29169941 cagtggcggagcccttcatgggctggggtgggccacagcccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgagattttatgcaatt 29170040  T
Q  335 ttgt 338  Q
    ||||    
T  29170041 ttgt 29170044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 37125692 - 37125794
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||             ||||||||||||| |||||||||||| ||||||| |||||    
T  37125692 cagtggcggagcccttcatgggctgaggtgggccacggcccacccggaaaaattataaaatcaacgattataggtctattttgcgatattttatgcaatt 37125791  T
Q  335 ttg 337  Q
    |||    
T  37125792 ttg 37125794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 51139745 - 51139796
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  51139745 tcaacgattataggtctattttgcgagattttatacaattttgtgtcggttt 51139796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 29981865 - 29981754
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||             ||||||||||||| |||| |||| || ||||||| |||||    
T  29981865 cagtggcggagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattataggtctactttgtgatattttatgcaatt 29981766  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  29981765 ttgtgtcggttt 29981754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 47561726 - 47561837
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| | || | ||||||||||||||||||||||             ||||||||||||| |||||||||||| ||||||| |||||    
T  47561726 cagtggcggagcccttcataggtttgggtgggccacggcccacccggaaaaataaaaaaatcaacgattataggtctattttgcgatattttatgcaatt 47561825  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  47561826 ttgtgtaggttt 47561837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 9246994 - 9246956
Alignment:
Q  300 gattatagatctattttgcgagattttatacaattttgt 338  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9246994 gattatagatctattttgcgagattttatacaattttgt 9246956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 42372148 - 42372193
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  42372148 attataggtctattttgcgagattttatacaattttatgttggttt 42372193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 46224739 - 46224694
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  46224739 attatagatctattttgcgagattttatacaattttatgtcggttt 46224694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 42371969 - 42372080
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||  |||||||||||||||||||||| |             |||| |||||||| ||||||||| |||||||||| |||||    
T  42371969 cagtggcggagcccttcatggattggggtgggccacggcccacccagaaaaattaaaaaatcaatgattataggtctattttgtgagattttatgcaatt 42372068  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  42372069 ttgtgtcggttt 42372080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 24544816 - 24544765
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||| |||||    
T  24544816 tcaacgattataagtctattttgcgagattttatgcaattttgtgtcggttt 24544765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 40428879 - 40428828
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||    
T  40428879 tcaacgactataggtctattttgcgagattttatgcaattttgtgtcggttt 40428828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 44317626 - 44317673
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttg 342  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  44317626 tcaacgattataggtctattttgcgagattttatgtaattttgtgttg 44317673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 45836903 - 45836946
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  45836903 tcaacgattataggtctatattgcgagattttatacaattttgt 45836946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9042576 - 9042530
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  9042576 cagtggcggagcccttcatgggctgggctgggccacggcccatccgg 9042530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 23177351 - 23177444
Alignment:
Q  245 gcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||| |||||||||||||||||||| ||||||||             ||||||||||||  |||||||||||||||||||| |||||||||    
T  23177351 gcccttcgtgggctggggtgggccacggtccacccggaaaaatttaaaaatcaacgattataagtctattttgcgagattttatgcaattttgt 23177444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 919689 - 919644
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  919689 attataggtctattttgcgagattttatacaattttatgtcggttt 919644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 8086408 - 8086453
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  8086408 attataggtctattttgcgagattttatacaattttatgtcggttt 8086453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 24790613 - 24790658
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  24790613 attataggtctattttgcgagattttatacaattttatgtcggttt 24790658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 25299067 - 25299022
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  25299067 attataggtctattttgcgagattttatacaattttatgtcggttt 25299022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 29981686 - 29981641
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  29981686 attataggtctattttgcgagattttatacaattttatgtcggttt 29981641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 32540690 - 32540641
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  32540690 aacgactataggtctattttacgagattttatacaattttgtgtcggttt 32540641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 40428760 - 40428715
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  40428760 attatagttctattttgcgagattttatacaattttatgtcggttt 40428715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 40567144 - 40567189
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  40567144 attataggtctattttgcgagattttatacaattttatgtcggttt 40567189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 45837022 - 45837067
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  45837022 attataggtctattttgcgagattttatacaattttatgtcggttt 45837067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 46224856 - 46224815
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgt 338  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  46224856 aacgattataaatctattttgcgagattttatgcaattttgt 46224815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 48708396 - 48708351
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  48708396 attataggtctattttgcgagattttatacaattttatgtcggttt 48708351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 48708515 - 48708474
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  48708515 tcaacgattataggtctattttgcgagattttatgcaatttt 48708474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 48708576 - 48708535
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggccca 276  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  48708576 cagtggcggagcccttcatgggctggggtgagccacggccca 48708535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 37343027 - 37343067
Alignment:
Q  237 gtggcggagcccttcctgggctggggtgggccacggcccac 277  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  37343027 gtggcggagcccttcatgggctggggtcggccacggcccac 37343067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 46224918 - 46224874
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||    
T  46224918 agtggcggagcccttcatgggttggggtgggccacggtccacccg 46224874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 8086289 - 8086340
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||| ||||||||| ||||||| ||| |||||    
T  8086289 tcaacgactatagatctattttgctagattttatgcaattttatgtaggttt 8086340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 37125871 - 37125906
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  37125871 attataggtctattttgcgagattttatacaatttt 37125906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 44317745 - 44317780
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  44317745 attataggtctattttgcgagattttatacaatttt 44317780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 17880011 - 17879973
Alignment:
Q  243 gagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  17880011 gagcccttcatgggctggggtgggtcacggcccacccgg 17879973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 25299181 - 25299135
Alignment:
Q  300 gattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||| |||||||||||||||||||| ||| ||||||| |||||    
T  25299181 gattataggtctattttgcgagattttatgcaactttgtgtcggttt 25299135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 346
Target Start/End: Original strand, 40567042 - 40567076
Alignment:
Q  312 attttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||||||| |||||||||||||||||    
T  40567042 attttgcgagattttatgcaattttgtgttggttt 40567076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 16692928 - 16692883
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  16692928 attataggtctattttgtgagattttatacaattttatgtcggttt 16692883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 23177528 - 23177565
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  23177528 tctattttgcgagattttatacaattttatgtcggttt 23177565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 33012036 - 33011991
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||    
T  33012036 attataggtctattttgcgagattttatgcaattttatgtcggttt 33011991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 43532519 - 43532470
Alignment:
Q  232 aaccagtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    |||| ||||||||||||| | |||| ||||||||||||||||||| ||||    
T  43532519 aaccggtggcggagccctccatgggttggggtgggccacggcccatccgg 43532470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 45836854 - 45836887
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggcc 268  Q
    ||||||||||||||||| ||||||||||||||||    
T  45836854 cagtggcggagcccttcatgggctggggtgggcc 45836887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 47561905 - 47561950
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||| ||||||||||||||| ||| |||||    
T  47561905 attataggtctattttgcgaaattttatacaattttatgtcggttt 47561950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 50)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 41838116 - 41838003
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaa 332  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||             ||||||||||||| |||||||||||||||||||| |||    
T  41838116 accagtggcggagcccttcatgggctggggtgggccacggcccgcccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaa 41838017  T
Q  333 ttttgtgttggttt 346  Q
    |||||||| |||||    
T  41838016 ttttgtgtcggttt 41838003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 2317121 - 2317172
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2317121 tcaacgattataggtctattttgcgagattttatacaattttgtgttggttt 2317172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 24797216 - 24797110
Alignment:
Q  232 aaccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttataca 331  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||             ||||||||||||| |||||||||| ||||||||| ||    
T  24797216 aaccagtggcggagcccttcatgggctggggtgggccacggcccatccggaaaaatttaaaaatcaacgattataggtctattttgcaagattttatgca 24797117  T
Q  332 attttgt 338  Q
    |||||||    
T  24797116 attttgt 24797110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 3659984 - 3659877
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaa 332  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||             ||||||||||||  |||||||||||||||||||| |||    
T  3659984 accagtggcggagcccttcatgggctgggatgggccacagcccacccggaaaaattataaaatcaacgattataagtctattttgcgagattttatgcaa 3659885  T
Q  333 ttttgtgt 340  Q
    ||||||||    
T  3659884 ttttgtgt 3659877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 7413091 - 7413142
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  7413091 tcaacgattataggtctattttgcgagattttatacaattttgtgtcggttt 7413142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 34934417 - 34934370
Alignment:
Q  233 accagtggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34934417 accagtggcggagcccttcatgggctggggtgggccacggcccacccg 34934370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 3886940 - 3886835
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||| ||||||||  |||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  3886940 cagtggcggagcccttcatgggctggggtaggccacggttcacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 3886841  T
Q  335 ttgtgt 340  Q
    ||||||    
T  3886840 ttgtgt 3886835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 9830607 - 9830712
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||              ||||||||||||| | |||||||||||||||||| ||| |    
T  9830607 cagtggcggagcccttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacgattataggtttattttgcgagattttatgcaact 9830706  T
Q  335 ttgtgt 340  Q
    ||||||    
T  9830707 ttgtgt 9830712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 10092315 - 10092365
Alignment:
Q  296 caacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10092315 caacgattataggtctattttgcgagattttatgcaattttgtgttggttt 10092365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 5590330 - 5590222
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttg 337  Q
    |||||||||||||  |||||||||||||||||||||||||||||             ||||||| ||||| |||||||| ||||||||||| ||||||||    
T  5590330 tggcggagcccttaatgggctggggtgggccacggcccacccggaaaaattaaaaaatcaacgactataggtctatttttcgagattttatgcaattttg 5590231  T
Q  338 tgttggttt 346  Q
    ||| |||||    
T  5590230 tgtcggttt 5590222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 38567124 - 38567236
Alignment:
Q  232 aaccagtggcggagcccttcctgggct-ggggtgggccacggcccaccc-ggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttata 329  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||| ||             ||||||||||||| | ||||||||||||||||||     
T  38567124 aaccagtggcggagcccttcatgggctgggggtgggccacggcccacccaggaaaaattaaaaaatcaacgattataggtatattttgcgagattttatg 38567223  T
Q  330 caattttgtgttg 342  Q
    |||||||||||||    
T  38567224 caattttgtgttg 38567236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 7242734 - 7242683
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||||||||    
T  7242734 tcaacgattataggtttattttgcgagattttatgcaattttgtgttggttt 7242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 7422148 - 7422097
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  7422148 tcaacgattataggtttattttgcgagattttatacaattttgtgtcggttt 7422097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 42556193 - 42556142
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||||    
T  42556193 tcaacgattataggtctattttgcgagattttatgcaattttgtgtcggttt 42556142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 43117408 - 43117459
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  43117408 tcaacaattataggtctattttgcgagattttatacaattttgtgtcggttt 43117459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 1183884 - 1183925
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgt 338  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  1183884 aacgattatagatctattttgcgagattttatgcaattttgt 1183925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 4697985 - 4698030
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  4697985 attatagatctattttgcgagattttatacaattttatgtcggttt 4698030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 6316877 - 6316981
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattt 335  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||              ||||| ||||||| ||||||||| |||||||||| ||||||    
T  6316877 agtggcggagcctttcatgggctggggtgggccacggcccacccgaaaaaattaaaaaatcaacaattataggtctattttgtgagattttatgcaattt 6316976  T
Q  336 tgtgt 340  Q
    |||||    
T  6316977 tgtgt 6316981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 28564944 - 28564989
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  28564944 tcaacgattataggtctattttgcgagattttatgcaattttgtgt 28564989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 28572567 - 28572612
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  28572567 tcaacgattataggtctattttgcgagattttatgcaattttgtgt 28572612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 197265 - 197313
Alignment:
Q  298 acgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  197265 acgattataggtctattttgcgagattttatacaattttatgtcggttt 197313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 312102 - 312150
Alignment:
Q  298 acgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  312102 acgattataggtctattttgcgagattttatacaattttatgtcggttt 312150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 1183823 - 1183863
Alignment:
Q  236 agtggcggagcccttcctgggctggggtgggccacggccca 276  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  1183823 agtggcggagcccttcatgggctggggtgggccacggccca 1183863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 4231220 - 4231330
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||              ||||||||||||| |||||||| ||||||||||| |||||    
T  4231220 cagtggcggaccccttcatgggctagggtgggccacggcccacccg-aaaaattaaaaaatcaacgattataggtctattttacgagattttatgcaatt 4231318  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  4231319 ttgtgtcggttt 4231330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 10092433 - 10092468
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  10092433 attatagatctattttgcgagattttatacaatttt 10092468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 21434899 - 21434950
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| | ||||||||||| |||||| |||||||||||||||||    
T  21434899 tcaacgattataggtttattttgcgaggttttatgcaattttgtgttggttt 21434950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 22658446 - 22658395
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||| |||||    
T  22658446 tcaacgcttataggtctattttgcgagattttatgcaattttgtgtcggttt 22658395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 38567306 - 38567353
Alignment:
Q  299 cgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  38567306 cgattataggtctattttgcgagattttatacaattttatgtcggttt 38567353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 7012337 - 7012375
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggc 273  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7012337 cagtggcggagcccttcatgggctggggtgggccacggc 7012375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 3886761 - 3886716
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  3886761 attataggtctattttgcgagattttatacaattttatgtcggttt 3886716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 5590154 - 5590109
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  5590154 attataggtctattttgcgagattttatacaattttatgtcggttt 5590109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 7012516 - 7012561
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  7012516 attataggtctattttgcgagattttatacaattttatgtcggttt 7012561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 11635758 - 11635803
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||||    
T  11635758 cagtggcggagcccttcatgggctagggtgggccacgacccacccg 11635803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 22658327 - 22658282
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  22658327 attataggtctattttgcgagattttatacaattttatgtcggttt 22658282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 36060417 - 36060462
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||||| | |||||||||||||||||| |||||||||||    
T  36060417 tcaacgattataggtatattttgcgagattttatgcaattttgtgt 36060462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 36060536 - 36060581
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  36060536 attataggtctattttgcgagattttatacaattttatgtcggttt 36060581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 42556074 - 42556029
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  42556074 attataggtctattttgcgagattttatacaattttatgtcggttt 42556029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 43117528 - 43117573
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  43117528 attataggtctattttgcgagattttatacaattttatgtcggttt 43117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 1098057 - 1098160
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||  || |||||||||||||||||||||             ||||||||||||| |||| ||||||| ||||||| |||||    
T  1098057 cagtggcggagcccttcatggcgtgaggtgggccacggcccacccggaaaaattaaaaaatcaacgattataggtctaatttgcgatattttatgcaatt 1098156  T
Q  335 ttgt 338  Q
    ||||    
T  1098157 ttgt 1098160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 32018073 - 32018030
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||    
T  32018073 aacgattataggtctattttaagagattttatacaattttgtgt 32018030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 41388065 - 41388116
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||||| | |||||||| ||||||||||||||||||||| |||||    
T  41388065 tcaactattataggtttattttgcaagattttatacaattttgtgtcggttt 41388116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Complemental strand, 25642823 - 25642781
Alignment:
Q  304 atagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||| ||||||||||||||||||||| |||||||||| |||||    
T  25642823 ataggtctattttgcgagattttatataattttgtgtcggttt 25642781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 1184001 - 1184046
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||| ||||||||||||||||||||||| ||| |||||    
T  1184001 attataggtctaatttgcgagattttatacaattttatgtcggttt 1184046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 2317240 - 2317285
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||| ||||||||||||||| ||| |||||    
T  2317240 attataggtctattttgcgatattttatacaattttatgtcggttt 2317285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 7242608 - 7242571
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  7242608 tctattttgcgagattttatacaattttatgtcggttt 7242571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 21435018 - 21435063
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||| ||||||||||||||||| ||| |||||    
T  21435018 attataggtctattttgctagattttatacaattttatgtcggttt 21435063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 28565063 - 28565108
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  28565063 attataggtctattttgtgagattttatacaattttatgtcggttt 28565108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 28572686 - 28572731
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  28572686 attataggtctattttgtgagattttatacaattttatgtcggttt 28572731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 41388184 - 41388229
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  41388184 attataggtctattttgtgagattttatacaattttatgtcggttt 41388229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 41169877 - 41169921
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggtt 345  Q
    ||||||| ||||||||||||||||||||| |||||| ||| ||||    
T  41169877 attataggtctattttgcgagattttatataattttatgtcggtt 41169921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 346
Target Start/End: Original strand, 19048 - 19156
Alignment:
Q  238 tggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaattttg 337  Q
    |||||||||||||| |||||||||||||||||||||||||||||             |||||||| |||| |||||||||||||||||||| ||||||||    
T  19048 tggcggagcccttcatgggctggggtgggccacggcccacccggaaaaataaaaaaatcaacgatcataggtctattttgcgagattttatgcaattttg 19147  T
Q  338 tgttggttt 346  Q
    ||| |||||    
T  19148 tgtcggttt 19156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 19224 - 19269
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  19224 attatagatctattttgcgagattttatacaattttatgtcggttt 19269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 64933 - 65044
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||              ||||| |||||| |||||||||||||||||||| |||||    
T  64933 cagtggcggagcccttcatgggctggggtgggccacggcccacccggaaaaattaaaaaaacaacgcttataggtctattttgcgagattttatgcaatt 65032  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  65033 ttgtgtcggttt 65044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 65226 - 65271
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  65226 attataggtctattttgcgagattttatacaattttatgtcggttt 65271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 65112 - 65157
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| ||||||||| |||||||||||||||||| ||| |||||    
T  65112 attataggtctattttgtgagattttatacaattttatgtcggttt 65157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 346
Target Start/End: Original strand, 12698493 - 12698605
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnn-tcaacgattatagatctattttgcgagattttatacaat 333  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||              ||||| ||||||| |||||||||||||||||||||||||    
T  12698493 cagtggcggagcccttcatgggctggggtgggccacggccgacccggaaaaatttaaaaaatcaacaattataggtctattttgcgagattttatacaat 12698592  T
Q  334 tttgtgttggttt 346  Q
    ||||||| |||||    
T  12698593 tttgtgtcggttt 12698605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 2660997 - 2660894
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||             ||||||||||||| |||||||||||||||||||| |||||    
T  2660997 cagtggcggagcccttcatgggctgggatgggccacgacccacccggaaaaattaaaaaatcaacgattataggtctattttgcgagattttatgcaatt 2660898  T
Q  335 ttgt 338  Q
    ||||    
T  2660897 ttgt 2660894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 24635629 - 24635518
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||             ||||||||||||| |||| ||||||||||||||| |||||    
T  24635629 cagtggcgaagcccttcatgggctggggtgggccacggcccatccggaaaaattaaaaaatcaacgattataggtctaatttgcgagattttatgcaatt 24635530  T
Q  335 ttgtgttggttt 346  Q
    |||| |||||||    
T  24635529 ttgtattggttt 24635518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 13405460 - 13405411
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  13405460 aacgattataggtctattttgcgagattttatacaattttgtgtcggttt 13405411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 11450667 - 11450552
Alignment:
Q  235 cagtggcggagcccttcctgggctggg----gtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatac 330  Q
    ||||||||||||||||| |||||||||    ||||||||||||||||||||             |||||||||||| |||||||||||||||| |||| |    
T  11450667 cagtggcggagcccttcatgggctgggtggggtgggccacggcccacccggaaaaatttaaatatcaacgattatatatctattttgcgagatcttatgc 11450568  T
Q  331 aattttgtgttggttt 346  Q
    |||||||||| |||||    
T  11450567 aattttgtgtcggttt 11450552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 26468508 - 26468559
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||    
T  26468508 tcaactattataggtctattttgcgagattttatacaattttgtgtcggttt 26468559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 338
Target Start/End: Complemental strand, 9079215 - 9079111
Alignment:
Q  234 ccagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaat 333  Q
    |||||||||||||||||| ||| |||||||||||||| ||||| ||||             ||||||||||||| |||| ||||||||||||||| ||||    
T  9079215 ccagtggcggagcccttcatggactggggtgggccacagcccatccggaaaaattaaaaaatcaacgattataggtctaatttgcgagattttatgcaat 9079116  T
Q  334 tttgt 338  Q
    |||||    
T  9079115 tttgt 9079111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 12996464 - 12996509
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||    
T  12996464 attatagatctattttgcgagattttatacaattttatgtcggttt 12996509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 346
Target Start/End: Complemental strand, 16461568 - 16461457
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccacccggnnnnnnnnnnnnntcaacgattatagatctattttgcgagattttatacaatt 334  Q
    ||||||||||| ||||| ||| |||||||||| ||||||||||||||             ||||||||||||   ||||||||||||||||||| |||||    
T  16461568 cagtggcggagtccttcatggactggggtgggtcacggcccacccggaaatattaaaaaatcaacgattataagcctattttgcgagattttatgcaatt 16461469  T
Q  335 ttgtgttggttt 346  Q
    |||||| |||||    
T  16461468 ttgtgtcggttt 16461457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 24130396 - 24130352
Alignment:
Q  237 gtggcggagcccttcctgggctggggtgggccacggcccacccgg 281  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  24130396 gtggcggagcccttcatgggctggggtgggccactgcccacccgg 24130352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 15469149 - 15469200
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||| |||||    
T  15469149 tcaacgattataggtctattttgcaagattttatgcaattttgtgtcggttt 15469200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 34023641 - 34023590
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||| |||||    
T  34023641 tcaacgattataggtctattttacgagattttatataattttgtgtcggttt 34023590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 7021996 - 7022041
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  7021996 attataggtctattttgcgagattttatacaattttatgtcggttt 7022041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 15469268 - 15469313
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||    
T  15469268 attataggtctattttgcgagattttatacaattttatgtcggttt 15469313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 34023522 - 34023477
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||    
T  34023522 attatagatctattttacgagattttatacaattttatgtcggttt 34023477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 7021882 - 7021922
Alignment:
Q  300 gattatagatctattttgcgagattttatacaattttgtgt 340  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  7021882 gattataggtctattttgcgagattttatgcaattttgtgt 7021922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 10290457 - 10290501
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccaccc 279  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||    
T  10290457 cagtggcggagcccttcatgggctagggtgggccatggcccaccc 10290501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 2660818 - 2660783
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2660818 attataggtctattttgcgagattttatacaatttt 2660783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 7536518 - 7536561
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgt 340  Q
    |||||||||||||||||||||   ||||||||||||||||||||    
T  7536518 aacgattatagatctattttgtaggattttatacaattttgtgt 7536561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 8560485 - 8560536
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||||||||| ||||  |||||||||||||| ||||||||| |||||||    
T  8560485 tcaacgattataggtctaaattgcgagattttatgcaattttgtattggttt 8560536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 8560604 - 8560639
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8560604 attatagatctattttgtgagattttatacaatttt 8560639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 12996343 - 12996386
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||    
T  12996343 tcaatgataatagatatattttgcgagattttatacaattttgt 12996386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 26468627 - 26468662
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26468627 attataggtctattttgcgagattttatacaatttt 26468662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 34127557 - 34127600
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||    
T  34127557 tcaactattataagtctattttgcgagattttatacaattttgt 34127600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 14883261 - 14883219
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttg 337  Q
    ||||||||||||  ||||||| |||||||||||||||||||||    
T  14883261 tcaacgattataagtctatttcgcgagattttatacaattttg 14883219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 13405518 - 13405477
Alignment:
Q  239 ggcggagcccttcctgggctggggtgggccacggcccacccg 280  Q
    ||||||||||||| |||| |||||||||||||| ||||||||    
T  13405518 ggcggagcccttcatgggttggggtgggccacgacccacccg 13405477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 34127676 - 34127721
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||||| |||||||||| ||||||||||||||||| ||| |||||    
T  34127676 attataggtctattttgcaagattttatacaattttatgtcggttt 34127721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 11166 - 11210
Alignment:
Q  235 cagtggcggagcccttcctgggctggggtgggccacggcccaccc 279  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  11166 cagtggcggagcccttcatgggctggggtgggccacggcccaccc 11210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 11237 - 11280
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||||| |||||||||||||||||| |||||||||    
T  11237 tcaacgattatagatttattttgcgagattttatgcaattttgt 11280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 11356 - 11401
Alignment:
Q  301 attatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||    
T  11356 attatagatcaattttgcgagattttatacaattttatgtcggttt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Original strand, 331950 - 331985
Alignment:
Q  301 attatagatctattttgcgagattttatacaatttt 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  331950 attatagatctattttgcgagattttatacaatttt 331985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 331831 - 331874
Alignment:
Q  295 tcaacgattatagatctattttgcgagattttatacaattttgt 338  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||    
T  331831 tcaacgattataggtctattttgcaagattttatgcaattttgt 331874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 1290 - 1327
Alignment:
Q  309 tctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  1290 tctattttgcgagattttatacaattttatgtcggttt 1327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 82941 - 82892
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    ||||| ||||| |||||| |||||||||||||||| |||||||| |||||    
T  82941 aacgactataggtctattatgcgagattttatacacttttgtgtcggttt 82892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 303915 - 303866
Alignment:
Q  297 aacgattatagatctattttgcgagattttatacaattttgtgttggttt 346  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||| |||||    
T  303915 aacgattaaagatttattttgtgagattttatacaattttatgtcggttt 303866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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