View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10544_5 (Length: 345)
Name: NF10544_5
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10544_5 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2578969 - 2579245
Alignment:
| Q |
1 |
gtatgggtatccatccacttttacgagtaattatccatgatgttttttgtaaggatttcaacgaatatgattccaatattatctatcatccctaatagaa |
100 |
Q |
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| T |
2578969 |
gtatgggtatccatccacttttacgagtaattatccatgatgttttttttaaggaattcaacgaatatgattccaatattatctatcatccctaatagaa |
2579068 |
T |
|
| Q |
101 |
aacaattgaatttttaagcatatttcttgtatactttttccatctccaa-nnnnnnnnnnnnnnnaatgtcattattttatcacttttgcatagatgaat |
199 |
Q |
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| T |
2579069 |
aacaattgaatttttaagcata-ttcttgtatactttttccatctccaatttttcgtttttttttaatgtcattattttatcacttttgcatagatgaat |
2579167 |
T |
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| Q |
200 |
ttttatnnnnnnnngttatagtatacaatctttctctcgactgattaaaattcatggatccattcttgttattgatcaat |
279 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2579168 |
ttttat--aaaaaagttatagtatacaatctttctctccactgattaaaattcatggatccattcttgttattgatcaat |
2579245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 2579223 - 2579282
Alignment:
| Q |
278 |
atccattcttgttattgatcaatgcacttgtgtcactgttgggaattctctatattcttc |
337 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
2579223 |
atccattcttgttattgatcaatgcacttgtgccactgttgggaattctctattttcttc |
2579282 |
T |
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