View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10544_6 (Length: 293)

Name: NF10544_6
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10544_6
NF10544_6
[»] chr6 (17 HSPs)
chr6 (33-207)||(33305197-33305371)
chr6 (31-241)||(9167478-9167688)
chr6 (86-235)||(33410706-33410855)
chr6 (33-233)||(31561982-31562182)
chr6 (33-252)||(33263348-33263570)
chr6 (72-230)||(33401373-33401531)
chr6 (59-238)||(33643773-33643956)
chr6 (33-245)||(33058274-33058489)
chr6 (33-194)||(33286259-33286420)
chr6 (43-178)||(33359439-33359574)
chr6 (33-216)||(33272515-33272696)
chr6 (43-193)||(33388768-33388915)
chr6 (33-64)||(33399740-33399771)
chr6 (1-35)||(12698571-12698605)
chr6 (1-35)||(13405411-13405445)
chr6 (137-195)||(13610357-13610415)
chr6 (1-35)||(26468525-26468559)
[»] chr2 (8 HSPs)
chr2 (31-251)||(17439978-17440199)
chr2 (1-35)||(1021116-1021150)
chr2 (1-35)||(1115086-1115120)
chr2 (1-35)||(11935424-11935458)
chr2 (1-35)||(16194328-16194362)
chr2 (1-35)||(41699260-41699294)
chr2 (1-35)||(43471502-43471536)
chr2 (1-35)||(44545664-44545698)
[»] chr4 (15 HSPs)
chr4 (79-233)||(31503299-31503453)
chr4 (74-194)||(31157988-31158108)
chr4 (69-235)||(31498063-31498229)
chr4 (87-194)||(31484023-31484130)
chr4 (72-194)||(31149112-31149234)
chr4 (92-233)||(31527191-31527332)
chr4 (83-235)||(31478147-31478298)
chr4 (150-197)||(31033070-31033117)
chr4 (1-35)||(4632753-4632787)
chr4 (1-35)||(13613140-13613174)
chr4 (1-35)||(13857688-13857722)
chr4 (1-35)||(27270429-27270463)
chr4 (89-127)||(31018547-31018585)
chr4 (1-35)||(36955058-36955092)
chr4 (7-35)||(9046135-9046163)
[»] scaffold1408 (1 HSPs)
scaffold1408 (86-194)||(1395-1503)
[»] scaffold0428 (1 HSPs)
scaffold0428 (86-194)||(7141-7249)
[»] chr8 (6 HSPs)
chr8 (1-35)||(2317138-2317172)
chr8 (1-35)||(7242683-7242717)
chr8 (1-35)||(7413108-7413142)
chr8 (1-35)||(7422097-7422131)
chr8 (1-35)||(10092331-10092365)
chr8 (1-35)||(43117425-43117459)
[»] chr3 (4 HSPs)
chr3 (1-35)||(52499246-52499280)
chr3 (1-35)||(35083982-35084016)
chr3 (1-35)||(45045399-45045433)
chr3 (1-35)||(52202058-52202092)
[»] chr7 (8 HSPs)
chr7 (1-35)||(9624072-9624106)
chr7 (1-35)||(22566628-22566662)
chr7 (1-35)||(26873779-26873813)
chr7 (1-35)||(44142838-44142872)
chr7 (1-35)||(44467956-44467990)
chr7 (1-35)||(44468069-44468103)
chr7 (7-35)||(23562701-23562729)
chr7 (1-37)||(25174221-25174257)
[»] chr5 (4 HSPs)
chr5 (1-35)||(3631335-3631369)
chr5 (1-35)||(7440528-7440562)
chr5 (1-35)||(8074286-8074320)
chr5 (1-35)||(43348710-43348744)
[»] chr1 (4 HSPs)
chr1 (1-35)||(919757-919791)
chr1 (1-35)||(40567042-40567076)
chr1 (1-35)||(42372159-42372193)
chr1 (1-35)||(51139762-51139796)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-37)||(11365-11401)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 33305197 - 33305371
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagataaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctct 132  Q
    ||||||||| | |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| || ||||||||||||  |   |||||||||    
T  33305197 aattgtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctct 33305296  T
Q  133 tcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaa 207  Q
    | ||||||||||| ||||||| |||||| |||||| |||||||||| ||| | ||||||||||||||||| ||||    
T  33305297 ttaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttaaaaggatattcatgccaatcaa 33305371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 9167478 - 9167688
Alignment:
Q  31 aaaattgtttcgaatttgtttatatttctaagataaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgct 130  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||| |||||   |||||||||||| ||| |||||||||||||||| | | |||| |     
T  9167478 aaaattgtttcgaatttgtttatatttctaaaataaacggtaataataagagagtttatagtacctttttgtttttccatagttgtttaatgttgctcca 9167577  T
Q  131 cttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaaga 230  Q
     |||||||||| ||  ||||||| |||||  |||||||| |||||||| ||| |||||||||||  || ||| |||| ||| |||| |||||||||||||    
T  9167578 gttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactcaagatatcttaattcgttcgaaaga 9167677  T
Q  231 caacttggtaa 241  Q
    | || ||||||    
T  9167678 ctacatggtaa 9167688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 33410706 - 33410855
Alignment:
Q  86 ttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatg 185  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||| ||| || ||||||||| ||||||| | |  |    
T  33410706 ttatagtaccttcttgcttttccatagttgtttgaagctgctattcttcaagatcaattcaacaagttcattagggtgaaaacttaatggcaattcccag 33410805  T
Q  186 aaaggatattcatgccagtcaaaataccttatttcgttcgaaagacaact 235  Q
    |||||||| |  | ||||||||||||||||| || ||| |||||||||||    
T  33410806 aaaggataatgctcccagtcaaaataccttaatttgtttgaaagacaact 33410855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 31562182 - 31561982
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagataaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctct 132  Q
    ||||||||| |||||||||||| |||||||||||  | |||||| ||||  | ||| |||||||||||| || ||||||||||  | | |||||| |||     
T  31562182 aattgtttctaatttgtttatagttctaagataattagtaataataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcg 31562083  T
Q  133 tcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaagaca 232  Q
     |||||||||||| ||||||| || ||| ||||||||||||||||| ||| |||||||||||||| |||| |||| ||| |||| || ||||||||||||    
T  31562082 ccaagatcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatattcaagccactcaacatatcttaatttgttcgaaagaca 31561983  T
Q  233 a 233  Q
    |    
T  31561982 a 31561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 252
Target Start/End: Original strand, 33263348 - 33263570
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagataa---acattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgc 129  Q
    |||||||||||||||| ||||||||||||||| |   | |||||||| ||||| | |||||||||||||||| |||||||||||||| | | | ||||      
T  33263348 aattgtttcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttt 33263447  T
Q  130 tcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaag 229  Q
    ||  |||||||||||| ||||||| |||||| ||||||||||||||||| ||| |  |||||||||||| ||| |||| ||| || | || ||| |||||    
T  33263448 tcaccaagatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaag 33263547  T
Q  230 acaacttggtaatcctgagatat 252  Q
    |||||||||   |||||||||||    
T  33263548 acaacttgggcttcctgagatat 33263570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 230
Target Start/End: Original strand, 33401373 - 33401531
Alignment:
Q  72 aataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttg 171  Q
    ||||| ||||| | |||||||||||||||| |||||||||||||||| | | |||| | |  |||||||||||| ||||||| |||||| ||||||||||    
T  33401373 aataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttg 33401472  T
Q  172 atggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaaga 230  Q
     |||||| ||| ||||||||||||||||||| |||| ||| |||| |||||| ||||||    
T  33401473 ttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaaga 33401531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 33643956 - 33643773
Alignment:
Q  59 taagataaacattaataaaa----agaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttg 154  Q
    |||||||||||||||||| |    |||| | ||||| |||||||||| |||||||||||||| | | | ||||  ||||||||| |||||| ||||||||    
T  33643956 taagataaacattaataatatataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttg 33643857  T
Q  155 attgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaagacaacttgg 238  Q
    ||||||||||||| ||||||||||  |||||||||||||   ||||||||||| ||| |||| ||| || ||||||||||||||    
T  33643856 attgggctgaaaatttgatggcaaacacatgaaaggatacatatgccagtcaacatatcttaattcctttgaaagacaacttgg 33643773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 33058274 - 33058489
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagat---aaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgc 129  Q
    |||||||| |||||||||||||||||||||||   ||| |||||||| || || | |||||||||||||||| |||||||||||||||| | | ||||      
T  33058274 aattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatagtaccttcttgtttttccatagttgtttaatgttgctct 33058373  T
Q  130 tcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaag 229  Q
     | ||||||||||||| ||||||| |||||| |||||| |||||||||| ||| || ||||||||  |  ||||| || | | |||| || |||||||||    
T  33058374 ccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatatctaaaccagtgaacaaatcttaatttgttcgaaag 33058473  T
Q  230 acaacttggtaatcct 245  Q
    ||| ||||| ||||||    
T  33058474 acagcttgggaatcct 33058489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 33286259 - 33286420
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagataaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctct 132  Q
    ||||||||| |||||||||||||||||||||| |||||| |||| ||||  | |||||||||||||||  || ||||||||||||| | | |||| || |    
T  33286259 aattgtttcaaatttgtttatatttctaagatgaacatttataataagataatttatagtaccttcttctttctccatagttgtttaatgttgctactat 33286358  T
Q  133 tcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatat 194  Q
     |||||||||||| ||||||| |||||| |||||| |||||||||| ||  |||||||||||    
T  33286359 gcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatat 33286420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 33359439 - 33359574
Alignment:
Q  43 aatttgtttatatttctaagataaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaa 142  Q
    |||| |||||||||||||| |||||||||||||| ||||| | ||||| |||||||||| |||||||||||||||| | ||||||  |||||||||||||    
T  33359439 aattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccatagttgtttaatgctgcttttcttcaagatcaa 33359538  T
Q  143 ttcaacaagttgattgggctgaaaacttgatggcaa 178  Q
    ||| ||||||| |||||  | |||||||| ||||||    
T  33359539 ttctacaagttcattggagttaaaacttgttggcaa 33359574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 33272515 - 33272696
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagataaacattaataaaaagaggagttata-gtaccttcttgcttttccatagttgtttgaggctgctgctc 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||   || || | ||||| ||||||||||| |||||||||||||||||| |  |||  ||    
T  33272515 aattgtttcaaatttgtttatatttctaagataaacattaat---aatagaatttataggtaccttcttgtttttccatagttgtttgatgtcgctattc 33272611  T
Q  132 ttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaatacctta 216  Q
     ||||||||||||| | ||| | |||||| |||||||||| ||| |   || ||||||||||| ||| ||| |||| ||| ||||    
T  33272612 atcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatctta 33272696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 33388768 - 33388915
Alignment:
Q  43 aatttgtttatatttctaagataaacattaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaa 142  Q
    ||||||||||||||||||||||||||||||||||  | | |   |||| |||||||||| | |||||||||||||||| |  |||   | ||||||||||    
T  33388768 aatttgtttatatttctaagataaacattaataatcaaatg---tataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaa 33388864  T
Q  143 ttcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggata 193  Q
     || ||||| | | |||| ||||||||||||||||| ||| ||||||||||    
T  33388865 ctctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggata 33388915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 33399740 - 33399771
Alignment:
Q  33 aattgtttcgaatttgtttatatttctaagat 64  Q
    ||||||||||||||||||||||||||||||||    
T  33399740 aattgtttcgaatttgtttatatttctaagat 33399771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12698605 - 12698571
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  12698605 aaaccgacacaaaattgtataaaatctcgcaaaat 12698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13405411 - 13405445
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  13405411 aaaccgacacaaaattgtataaaatctcgcaaaat 13405445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 13610415 - 13610357
Alignment:
Q  137 gatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatatt 195  Q
    ||||||||||||||||| ||  ||||||||||||||||||||  |  ||||||||||||    
T  13610415 gatcaattcaacaagtttatccggctgaaaacttgatggcaaacatgtgaaaggatatt 13610357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26468559 - 26468525
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  26468559 aaaccgacacaaaattgtataaaatctcgcaaaat 26468525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 17440199 - 17439978
Alignment:
Q  31 aaaattgtttcgaatttgtttatatttctaagataaacattaataaa-aagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgc 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||| | |||| ||||||||||| |||||||||| | ||| | | |||| |    
T  17440199 aaaattgtttcgaatttgtttatatttcaaagataaacattaattaataagagaatttatggtaccttcttgtttttccataggtttttaatgttgctcc 17440100  T
Q  130 tcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaag 229  Q
      | ||| |||||||| || |||| |||||| |||||||||| |||||| ||| |||||||||||| | |||| |||| ||| |||| || |||||||||    
T  17440099 catccaaaatcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatatttaggccactcaacatatcttaatttgttcgaaag 17440000  T
Q  230 acaacttggtaatcctgagata 251  Q
    ||||||||| ||||||||||||    
T  17439999 acaacttgggaatcctgagata 17439978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1021116 - 1021150
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  1021116 aaaccgacacaaaattgtataaaatctcgcaaaat 1021150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1115086 - 1115120
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  1115086 aaaccgacacaaaattgtataaaatctcgcaaaat 1115120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11935424 - 11935458
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  11935424 aaaccgacacaaaattgtataaaatctcgcaaaat 11935458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16194362 - 16194328
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  16194362 aaaccaacacaaaattgcataaaatctcgcaaaat 16194328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41699294 - 41699260
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  41699294 aaaccaacacaaaattgcataaaatctcgcaaaat 41699260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43471502 - 43471536
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  43471502 aaaccgacacaaaattgtataaaatctcgcaaaat 43471536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44545664 - 44545698
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  44545664 aaaccaacataaaattgtataaaatctcgcaaaat 44545698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 233
Target Start/End: Complemental strand, 31503453 - 31503299
Alignment:
Q  79 agaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaa 178  Q
    |||||| ||| ||||||||||||  || ||||| ||||| || |||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  31503453 agaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttgacggcaa 31503354  T
Q  179 gtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaagacaa 233  Q
     ||| ||||||||||||||  ||| |||| ||| |||| |||||| |||||||||    
T  31503353 atacttgaaaggatattcactccattcaacatatcttaattcgttagaaagacaa 31503299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 31157988 - 31158108
Alignment:
Q  74 taaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgat 173  Q
    ||||||||| | ||||||||||||||||  ||||||||||||||||| ||||||   | ||| |||||||||||||||||||||||||||||||| || |    
T  31157988 taaaaagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgct 31158087  T
Q  174 ggcaagtacatgaaaggatat 194  Q
    ||||| ||| |||||||||||    
T  31158088 ggcaaatacttgaaaggatat 31158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 31498229 - 31498063
Alignment:
Q  69 attaataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaac 168  Q
    |||||||| ||||| |  ||||||||||||  || ||||||||||||||||| || ||||   ||||||||   || ||| || ||||| |||||||||     
T  31498229 attaataataagagaatgtatagtaccttccggcctttccatagttgtttgatgcagctgtgtttcaagatatgttgaactagctgattaggctgaaaat 31498130  T
Q  169 ttgatggcaagtacatgaaaggatattcatgccagtcaaaataccttatttcgttcgaaagacaact 235  Q
    ||||||| || ||||||||||||||||||||||| |||||||| |||| || ||| |||||||||||    
T  31498129 ttgatggtaaatacatgaaaggatattcatgccactcaaaatatcttaatttgttggaaagacaact 31498063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 31484130 - 31484023
Alignment:
Q  87 tatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatga 186  Q
    |||||||||||||||| || ||| |||||||||| ||||||   |  || ||||||||||||||||||||||||| ||||| |||||||||| |||||||    
T  31484130 tatagtaccttcttgccttcccagagttgtttgatgctgctatccaccatgatcaattcaacaagttgattgggccgaaaatttgatggcaaatacatga 31484031  T
Q  187 aaggatat 194  Q
    ||||||||    
T  31484030 aaggatat 31484023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 31149112 - 31149234
Alignment:
Q  72 aataaaaagaggagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttg 171  Q
    ||||||||||| |  ||||||||||||||   ||||||||| |||||||  |||||   | ||||||||||||| ||||||||||| ||| |||||||||    
T  31149112 aataaaaagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttg 31149211  T
Q  172 atggcaagtacatgaaaggatat 194  Q
    ||||||| ||| |||||||||||    
T  31149212 atggcaaatacttgaaaggatat 31149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 31527191 - 31527332
Alignment:
Q  92 taccttcttgcttttccatagttgtttgaggctgctgctcttc-aagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatgaaagg 190  Q
    ||||||| ||| || |||||||||||||| ||||||  ||||| |||||||| ||||||||||| | ||| ||||||||||||||||| |||||||||||    
T  31527191 taccttcgtgccttcccatagttgtttgatgctgcta-tcttccaagatcaactcaacaagttggtagggttgaaaacttgatggcaaatacatgaaagg 31527289  T
Q  191 atattcatgccagtcaaaataccttatttcgttcgaaagacaa 233  Q
    ||||||  |||| |||| ||| |||| ||| || |||| ||||    
T  31527290 atattcccgccactcaacatatcttaattcattagaaatacaa 31527332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 31478298 - 31478147
Alignment:
Q  83 gagttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtac 182  Q
    ||||||||||||||| |||| ||||||||  ||||  | ||||||   || |||||||||||||||||||||||| |  | |||||| |||||||| |||    
T  31478298 gagttatagtacctt-ttgcctttccataactgttctatgctgctatactccaagatcaattcaacaagttgattagagtcaaaactcgatggcaaatac 31478200  T
Q  183 atgaaaggatattcatgccagtcaaaataccttatttcgttcgaaagacaact 235  Q
     ||||||||||||||  ||| |||| ||| |||| ||| || |||| ||||||    
T  31478199 ttgaaaggatattcactccactcaacatatcttagttctttagaaaaacaact 31478147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Original strand, 31033070 - 31033117
Alignment:
Q  150 agttgattgggctgaaaacttgatggcaagtacatgaaaggatattca 197  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||||||||    
T  31033070 agttgattggggtgaaaacttgtaggcaaatacatgaaaggatattca 31033117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4632753 - 4632787
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  4632753 aaactaacacaaaattgtataaaatctcgcaaaat 4632787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13613140 - 13613174
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  13613140 aaaccaacacaaaattgcataaaatctcgcaaaat 13613174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13857722 - 13857688
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  13857722 aaaccaacacaaaattgtataaaatctcacaaaat 13857688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27270463 - 27270429
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  27270463 aaaccgacacaaaattgtataaaatctcgcaaaat 27270429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 31018547 - 31018585
Alignment:
Q  89 tagtaccttcttgcttttccatagttgtttgaggctgct 127  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  31018547 tagtaccttcttgcctttccatagttgtttgatgctgct 31018585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36955058 - 36955092
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  36955058 aaaccaacacaaaattgcataaaatctcgcaaaat 36955092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 9046135 - 9046163
Alignment:
Q  7 acacaaaattgtataaaatctcgcaaaat 35  Q
    |||||||||||||||||||||||||||||    
T  9046135 acacaaaattgtataaaatctcgcaaaat 9046163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 1395 - 1503
Alignment:
Q  86 ttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatg 185  Q
    |||||||||||||||| |||||||||||||||| | || ||| |||  ||| |||||||| ||||||| |   || ||||||||||||||||  ||| ||    
T  1395 ttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttg 1494  T
Q  186 aaaggatat 194  Q
    |||||||||    
T  1495 aaaggatat 1503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Original strand, 7141 - 7249
Alignment:
Q  86 ttatagtaccttcttgcttttccatagttgtttgaggctgctgctcttcaagatcaattcaacaagttgattgggctgaaaacttgatggcaagtacatg 185  Q
    |||||||||||||||| |||||||||||||||| | || ||| |||  ||| |||||||| ||||||| |   || ||||||||||||||||  ||| ||    
T  7141 ttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatggcagatacttg 7240  T
Q  186 aaaggatat 194  Q
    |||||||||    
T  7241 aaaggatat 7249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2317172 - 2317138
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2317172 aaaccaacacaaaattgtataaaatctcgcaaaat 2317138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7242683 - 7242717
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  7242683 aaaccaacacaaaattgcataaaatctcgcaaaat 7242717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7413142 - 7413108
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  7413142 aaaccgacacaaaattgtataaaatctcgcaaaat 7413108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7422097 - 7422131
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  7422097 aaaccgacacaaaattgtataaaatctcgcaaaat 7422131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10092365 - 10092331
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  10092365 aaaccaacacaaaattgcataaaatctcgcaaaat 10092331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43117459 - 43117425
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  43117459 aaaccgacacaaaattgtataaaatctcgcaaaat 43117425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 52499246 - 52499280
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  52499246 aaaccaacacaaaattgtataaaatctcgcaaaat 52499280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35084016 - 35083982
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  35084016 aaaccaacataaaattgtataaaatctcgcaaaat 35083982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45045433 - 45045399
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  45045433 aaaccaacataaaattgtataaaatctcgcaaaat 45045399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52202092 - 52202058
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  52202092 aaaccgacacaaaattgtataaaatctcgcaaaat 52202058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9624106 - 9624072
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  9624106 aaaccaacacaaaattgcataaaatctcgcaaaat 9624072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22566628 - 22566662
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  22566628 aaaccgacacaaaattgtataaaatctcgcaaaat 22566662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26873813 - 26873779
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  26873813 aaaccgacacaaaattgtataaaatctcgcaaaat 26873779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44142872 - 44142838
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  44142872 aaaccaacacaaaattgcataaaatctcgcaaaat 44142838  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44467956 - 44467990
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  44467956 aaaccaacataaaattgtataaaatctcgcaaaat 44467990  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44468069 - 44468103
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  44468069 aaaccaacacaaaattgcataaaatctcgcaaaat 44468103  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 23562701 - 23562729
Alignment:
Q  7 acacaaaattgtataaaatctcgcaaaat 35  Q
    |||||||||||||||||||||||||||||    
T  23562701 acacaaaattgtataaaatctcgcaaaat 23562729  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25174257 - 25174221
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaattg 37  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  25174257 aaaccaacacataattatataaaatctcgcaaaattg 25174221  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3631369 - 3631335
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  3631369 aaaccaacacaaaattgcataaaatctcgcaaaat 3631335  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7440528 - 7440562
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  7440528 aaaccaacacaaaattgcataaaatctcgcaaaat 7440562  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8074286 - 8074320
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  8074286 aaaccgacacaaaattgtataaaatctcgcaaaat 8074320  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43348744 - 43348710
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  43348744 aaaccaacacaaaattgcataaaatctcgcaaaat 43348710  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 919757 - 919791
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  919757 aaaccaacacaaaattgcataaaatctcgcaaaat 919791  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40567076 - 40567042
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  40567076 aaaccaacacaaaattgcataaaatctcgcaaaat 40567042  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42372193 - 42372159
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  42372193 aaaccaacataaaattgtataaaatctcgcaaaat 42372159  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 51139796 - 51139762
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaat 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  51139796 aaaccgacacaaaattgtataaaatctcgcaaaat 51139762  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11401 - 11365
Alignment:
Q  1 aaaccaacacaaaattgtataaaatctcgcaaaattg 37  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  11401 aaaccgacataaaattgtataaaatctcgcaaaattg 11365  T

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