View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10544_low_1 (Length: 264)

Name: NF10544_low_1
Description: NF10544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10544_low_1
NF10544_low_1
[»] chr5 (3 HSPs)
chr5 (88-256)||(25899628-25899796)
chr5 (43-191)||(25902796-25902945)
chr5 (2-93)||(25902744-25902835)
[»] chr7 (3 HSPs)
chr7 (91-155)||(1382658-1382721)
chr7 (91-155)||(1388763-1388826)
chr7 (92-155)||(1356342-1356404)
[»] chr4 (3 HSPs)
chr4 (135-206)||(39811459-39811532)
chr4 (100-157)||(21119465-21119521)
chr4 (93-250)||(7034227-7034384)
[»] chr2 (1 HSPs)
chr2 (91-213)||(17361687-17361810)
[»] chr3 (1 HSPs)
chr3 (96-128)||(11436233-11436265)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 25899796 - 25899628
Alignment:
Q  88 acacctaccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactctcattcaacagtccctctatccaccacaccac 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25899796 acacctaccacgtctacaacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactctcattcaacgctccctctatccaccacaccac 25899697  T
Q  188 tacctataacagataagacacggtctctgatacgactcaaccttccgttcagctctaggtacctatgct 256  Q
    |||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||| |||| |||||    
T  25899696 tacccataacatataagacacggtctctgatacgacccaacattccgttcagctctagttacccatgct 25899628  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 25902945 - 25902796
Alignment:
Q  43 tactacaataacataaaactactaggtagctctaagacctctgccacacctaccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaat 142  Q
    |||||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  25902945 tactacaacaacataaaactactaggtagctctaagactcctgc-acacctaccacgtctacgacgataaatccaccttccatgaaacctcttgcaaaat 25902847  T
Q  143 tgcttctaaac--tctcattcaacagtccctctatccaccacaccactacc 191  Q
    || ||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  25902846 tggttctaaactctctcattcaacggtccctctatccaccacaccactacc 25902796  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 25902835 - 25902744
Alignment:
Q  2 tctctcatttaacggtcccactatccaccacaccactaccctactacaataacataaaactactaggtagctctaagacctctgccacacct 93  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||    
T  25902835 tctctcattcaacggtccctctatccaccacaccactaccctactacaacaacataaaactattaggtggctctaagacccctgccacacct 25902744  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 1382721 - 1382658
Alignment:
Q  91 cctaccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactc 155  Q
    ||||||||| |||| |||||| |||||||||||||| |||||| ||| |||||| ||||||||||    
T  1382721 cctaccacgcctacaacgatagacccgccctccatg-aacctcctgctaaattgattctaaactc 1382658  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 1388826 - 1388763
Alignment:
Q  91 cctaccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactc 155  Q
    ||||||||| |||| |||||| |||||||||||||| |||||| ||| |||||| ||||||||||    
T  1388826 cctaccacgcctacaacgatagacccgccctccatg-aacctcctgctaaattgattctaaactc 1388763  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 1356404 - 1356342
Alignment:
Q  92 ctaccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactc 155  Q
    |||||||| |||| ||||||||||||||||||||| |||||  |||||||||| ||| ||||||    
T  1356404 ctaccacgcctacaacgataaacccgccctccatg-aaccttctgcaaaattgattccaaactc 1356342  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 39811459 - 39811532
Alignment:
Q  135 tgcaaaattgcttctaaa--ctctcattcaacagtccctctatccaccacaccactacctataacagataagac 206  Q
    |||| |||||||||||||  ||||| ||||||||||||  | |||||||||||||| || || |||||||||||    
T  39811459 tgcataattgcttctaaaatctctccttcaacagtcccggtctccaccacaccacttcccatgacagataagac 39811532  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 21119521 - 21119465
Alignment:
Q  100 tctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactctc 157  Q
    |||||||||||||| | | ||||| |||| ||||||||||||||||||| ||||||||    
T  21119521 tctacgacgataaatctgtcctccctgaa-cctcttgcaaaattgcttccaaactctc 21119465  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 7034384 - 7034227
Alignment:
Q  93 taccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactct--cattcaacagtccctctatccaccacaccactac 190  Q
    ||||||| | || ||||||||||| ||||||||||| ||||   |||||||| ||| ||||| |  |||||| || ||||||| |||||||||| | |      
T  7034384 taccacgcccacaacgataaaccc-ccctccatgaa-cctccgtcaaaattgattccaaactattccattcaccaatccctctctccaccacactattgg 7034287  T
Q  191 ctataacagataagacacggtctctgatacgactcaaccttccgttcagctctaggtacc 250  Q
    | || |||||||||||| ||| ||||||| | | |||||||  | |||||||||||||||    
T  7034286 ccatgacagataagacatggtatctgatatggcccaaccttatggtcagctctaggtacc 7034227  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 17361687 - 17361810
Alignment:
Q  91 cctaccacgtctacgacgataaacccgccctccatgaaacctcttgcaaaattgcttctaaactct--cattcaacagtccctctatccaccacaccact 188  Q
    |||| |||| ||||||| ||||| |||||||||||| ||||||||  | ||||||||  |||||||  |||||| || |||| || |||||| |||||||    
T  17361687 cctaacacgcctacgacaataaatccgccctccatg-aacctcttaaagaattgctttcaaactctcccattcagcactccccctctccaccgcaccact 17361785  T
Q  189 acctataacagataagacacggtct 213  Q
     || | ||| ||||||||| |||||    
T  17361786 gcccaaaacggataagacatggtct 17361810  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 11436265 - 11436233
Alignment:
Q  96 cacgtctacgacgataaacccgccctccatgaa 128  Q
    |||| ||||||||||||||||||||||||||||    
T  11436265 cacgcctacgacgataaacccgccctccatgaa 11436233  T

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