View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10545_high_10 (Length: 234)

Name: NF10545_high_10
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10545_high_10
NF10545_high_10
[»] chr3 (41 HSPs)
chr3 (1-212)||(19392610-19392821)
chr3 (9-127)||(18102923-18103041)
chr3 (1-130)||(18143721-18143850)
chr3 (1-127)||(19436353-19436479)
chr3 (1-124)||(16676686-16676809)
chr3 (1-123)||(19333470-19333592)
chr3 (1-123)||(19461005-19461127)
chr3 (1-130)||(18164635-18164764)
chr3 (1-130)||(19350882-19351011)
chr3 (8-123)||(24493823-24493938)
chr3 (1-123)||(18115438-18115560)
chr3 (1-106)||(19399193-19399298)
chr3 (1-130)||(19413675-19413804)
chr3 (2-123)||(25462524-25462645)
chr3 (8-124)||(17941224-17941340)
chr3 (10-122)||(18107934-18108046)
chr3 (1-124)||(19375167-19375290)
chr3 (8-124)||(18022288-18022404)
chr3 (8-124)||(14896794-14896910)
chr3 (8-124)||(19419475-19419591)
chr3 (8-120)||(18015586-18015698)
chr3 (8-124)||(18146310-18146426)
chr3 (8-100)||(19380385-19380477)
chr3 (160-207)||(18164776-18164823)
chr3 (157-207)||(19399334-19399384)
chr3 (160-213)||(14896717-14896770)
chr3 (160-207)||(18143862-18143909)
chr3 (160-207)||(19380522-19380569)
chr3 (8-98)||(17728110-17728200)
chr3 (8-98)||(19029339-19029429)
chr3 (168-213)||(18146458-18146503)
chr3 (155-207)||(18115589-18115641)
chr3 (155-207)||(19419601-19419653)
chr3 (155-207)||(19461156-19461208)
chr3 (155-207)||(24493751-24493803)
chr3 (160-207)||(17728013-17728060)
chr3 (160-207)||(18103059-18103106)
chr3 (160-207)||(19029242-19029289)
chr3 (160-207)||(19333638-19333685)
chr3 (149-207)||(18022411-18022469)
chr3 (155-207)||(17941362-17941414)
[»] scaffold2156 (1 HSPs)
scaffold2156 (1-123)||(335-457)
[»] scaffold0640 (2 HSPs)
scaffold0640 (1-120)||(4873-4992)
scaffold0640 (155-213)||(5018-5076)
[»] chr8 (1 HSPs)
chr8 (1-127)||(8458958-8459084)
[»] chr6 (1 HSPs)
chr6 (1-123)||(13667279-13667401)
[»] chr4 (3 HSPs)
chr4 (1-124)||(15531836-15531962)
chr4 (150-207)||(15531970-15532027)
chr4 (163-207)||(2710909-2710953)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19392610 - 19392821
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19392610 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 19392709  T
Q  101 aacttgcctaccttgacttatcctacagctcagccggttccgtggttaatggttttcaaatggatagtcttgattggctttctccactttcttcattgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19392710 aacttgcctaccttgacttatcctacagctcagccggttccgtggttaatggttttcaaatggatagtcttgattggctttctccactttcttcattgaa 19392809  T
Q  201 atatctcttcct 212  Q
    ||||||||||||    
T  19392810 atatctcttcct 19392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 18102923 - 18103041
Alignment:
Q  9 acttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgcc 108  Q
    |||||||||||| | |||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |    
T  18102923 acttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattcaacacaacatcacacattcatctaaacttgtc 18103022  T
Q  109 taccttgacttatcctaca 127  Q
    |||||||||||||||||||    
T  18103023 taccttgacttatcctaca 18103041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18143721 - 18143850
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| |||||||||||||||||    |||||||||||  |||||||||||||| ||||||||| ||||||||| ||||| ||||    
T  18143721 attctagaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcacacattcctcta 18143820  T
Q  101 aacttgcctaccttgacttatcctacagct 130  Q
    |||||| |||||||||||||||||||||||    
T  18143821 aacttgtctaccttgacttatcctacagct 18143850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 19436353 - 19436479
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||| || ||||||||| ||| ||||| ||||||||||    
T  19436353 attctaaaacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatccattcaacacaatatcacacattcatcta 19436452  T
Q  101 aacttgcctaccttgacttatcctaca 127  Q
    |||||  ||||||||||||||| ||||    
T  19436453 aacttctctaccttgacttatcgtaca 19436479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 16676686 - 16676809
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||| |||||| | |||||||||||| |||||||||  ||| |||| ||| ||||||    
T  16676686 attctagaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaacaaaacctcacacatgcatcta 16676785  T
Q  101 aacttgcctaccttgacttatcct 124  Q
    | |||| |||||||||||||||||    
T  16676786 accttgtctaccttgacttatcct 16676809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 19333470 - 19333592
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| |||||||||||||||||   |||||  ||||||||||||| ||||||| |||||| || ||||||||| ||||||||||    
T  19333470 attctagaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccacacaacatcacacattcatcta 19333569  T
Q  101 aacttgcctaccttgacttatcc 123  Q
    ||||||  |||||||||||||||    
T  19333570 aacttgtataccttgacttatcc 19333592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 19461005 - 19461127
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| |||||||||||||||||   |||||| ||||| ||||||||| ||||| ||||||||| ||||||||| ||||||||||    
T  19461005 attctagaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaacacaacatcacacattcatcta 19461104  T
Q  101 aacttgcctaccttgacttatcc 123  Q
    | |||  ||||||||||||||||    
T  19461105 accttttctaccttgacttatcc 19461127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18164635 - 18164764
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| ||| |||||||||||||    ||||||||||| |||||||||||| || | ||||||| |||| |||| ||||||||||    
T  18164635 attctagaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaacacaacttcacacattcatcta 18164734  T
Q  101 aacttgcctaccttgacttatcctacagct 130  Q
    |||||| |||||||||||||||| ||||||    
T  18164735 aacttgtctaccttgacttatccaacagct 18164764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 19350882 - 19351011
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| |||||||||| |||||| | |||| ||||||| |||||||  |||||| ||||||||   |||||||| ||||| ||||    
T  19350882 attctagaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatccattcaaaaaaacatcacacattcctcta 19350981  T
Q  101 aacttgcctaccttgacttatcctacagct 130  Q
    |||||| |||||||||||||||||||||||    
T  19350982 aacttgtctaccttgacttatcctacagct 19351011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 24493938 - 24493823
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    ||||||||||||| ||||||||||| |||||||  || ||||||||  ||||||| |||||| ||||||||  ||||||||| ||||||||||||||||     
T  24493938 aacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaacttgt 24493839  T
Q  108 ctaccttgacttatcc 123  Q
    ||||||||||||||||    
T  24493838 ctaccttgacttatcc 24493823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 18115438 - 18115560
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| ||||||||||||||||||   ||||||||||| ||||||||| ||||| ||||||||| |||| |||| ||||||||||    
T  18115438 attctagaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaacacaacctcacacattcatcta 18115537  T
Q  101 aacttgcctaccttgacttatcc 123  Q
    | |||  | ||||||||||||||    
T  18115538 accttttccaccttgacttatcc 18115560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 19399193 - 19399298
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| ||||||||||||||||| | |||||| ||| | ||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  19399193 attctagaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaacacaatatcacacattcatcta 19399292  T
Q  101 aacttg 106  Q
    ||||||    
T  19399293 aacttg 19399298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 19413675 - 19413804
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| ||||||||||||||||||   ||| ||||||  | ||||||||||||| | ||| ||| ||| ||||| ||||||||||    
T  19413675 attctagaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaacacaatatcacacattcatcta 19413774  T
Q  101 aacttgcctaccttgacttatcctacagct 130  Q
    ||||||  ||||||||||||||||||||||    
T  19413775 aacttgtttaccttgacttatcctacagct 19413804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 25462524 - 25462645
Alignment:
Q  2 ttctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaa 101  Q
    ||||| ||||||||||||| |||||||||||||| || |  ||||| ||| || | ||||| ||||||||| |||||| ||||||||| |||||||||||    
T  25462524 ttctagaacttgagtttctcagttacttggatttaagtgataatgaatttaacatcataagtattccagcctttcaacacaacatcacacattcatctaa 25462623  T
Q  102 acttgcctaccttgacttatcc 123  Q
    ||||| ||| ||||||||||||    
T  25462624 acttgactatcttgacttatcc 25462645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 17941224 - 17941340
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    ||||||||||||| ||||| ||||||||||| |  ||| | ||||| ||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||     
T  17941224 aacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgt 17941323  T
Q  108 ctaccttgacttatcct 124  Q
    | ||||| |||||||||    
T  17941324 ccaccttaacttatcct 17941340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 18107934 - 18108046
Alignment:
Q  10 cttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgcct 109  Q
    ||||||||||| ||||| || ||||||||| ||||||||||||| || |||||||||||| ||||||||| ||| ||||| ||||||||||| ||| |      
T  18107934 cttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaacacaatatcacacattcatctaacctttcgc 18108033  T
Q  110 accttgacttatc 122  Q
    |||||||||||||    
T  18108034 accttgacttatc 18108046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 19375167 - 19375290
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| |||||||||||||||||    ||||| ||||||||||||||||||||  ||||||||| |||| |||| ||||||||||    
T  19375167 attctagaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaacacaacttcacacattcatcta 19375266  T
Q  101 aacttgcctaccttgacttatcct 124  Q
    | |||   | ||||||||||||||    
T  19375267 accttttgttccttgacttatcct 19375290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 18022288 - 18022404
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    ||||||||||||| ||||| |||||||||||    ||||| ||||| ||||||||||||||| | ||||||| ||||||||| || ||||||||| ||      
T  18022288 aacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatctattcaacacaacatcacacactcatctaaattttt 18022387  T
Q  108 ctaccttgacttatcct 124  Q
    |||||||||||||||||    
T  18022388 ctaccttgacttatcct 18022404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 14896910 - 14896794
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    |||| |||||||| |||||||| ||||||||   |||| ||||||| |||||||| ||||||| || ||||| ||||||||| ||||||||||  |||      
T  14896910 aactggagtttctcagttacttagatttgagtatgaatcattttgatgtgataagtattccagtcactcaacacaacatcacacattcatctagcctttt 14896811  T
Q  108 ctaccttgacttatcct 124  Q
    |||||||||||||||||    
T  14896810 ctaccttgacttatcct 14896794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 19419475 - 19419591
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    ||||||||||||| |||||||||||||||||    ||| | ||| | ||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||     
T  19419475 aacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattcaacacaacatcacacattcatctaaccttgt 19419574  T
Q  108 ctaccttgacttatcct 124  Q
      | |||||||||||||    
T  19419575 gaaacttgacttatcct 19419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 18015586 - 18015698
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    ||||||| ||||| |||||||||||||||||    ||||| ||||| |||||||| |||||| ||||||||  ||||||||| ||||| ||||| |||      
T  18015586 aacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaacaacatcacacattcctctaacctttt 18015685  T
Q  108 ctaccttgactta 120  Q
    |||||||||||||    
T  18015686 ctaccttgactta 18015698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 18146310 - 18146426
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgc 107  Q
    ||||||||||||| | ||||||||||||||| |  ||| |||||||  |||||||||||||| ||||||||| ||| ||||| |||  |||||| |||      
T  18146310 aacttgagtttcttaattacttggatttgagtgataattattttgatatgataagaattccatccattcaacacaatatcacacatatatctaacctttt 18146409  T
Q  108 ctaccttgacttatcct 124  Q
     ||||||||||||||||    
T  18146410 gtaccttgacttatcct 18146426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 19380385 - 19380477
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    ||||| ||||||| ||||||||||||||||| |  ||| ||||||| ||||||||||||||| |||||||||  ||||| || ||||||||||    
T  19380385 aacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattcaacaaaacattacacattcatcta 19380477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 18164776 - 18164823
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  18164776 atggataatcttgattggctttctccactttcttccttgaaatatctc 18164823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 19399334 - 19399384
Alignment:
Q  157 caaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  19399334 caaatggataatcttgattggctttctccactttcttccttaaaatatctc 19399384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 14896770 - 14896717
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctcttcctt 213  Q
    ||||||| |||||||||||||||||||| |||||| |||||||||||| |||||    
T  14896770 atggataatcttgattggctttctccacattcttccttgaaatatctcatcctt 14896717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 18143862 - 18143909
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||    
T  18143862 atggataatcttgattggctttctccactttcttccttaaaatatctc 18143909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 19380522 - 19380569
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||    
T  19380522 atggataatcttgattggctttctccactttcttccttaaaatatctc 19380569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 17728200 - 17728110
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatc 98  Q
    ||||||||||||| ||||||||||||||||||   ||| | ||||| |  |||||||||||| ||||||| | ||||||||| | ||||||    
T  17728200 aacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacacgttcatc 17728110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 19029429 - 19029339
Alignment:
Q  8 aacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatc 98  Q
    ||||||||||||| ||||||||||||||||||   ||| | ||||| |  |||||||||||| ||||||| | ||||||||| | ||||||    
T  19029429 aacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacacgttcatc 19029339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 18146458 - 18146503
Alignment:
Q  168 tcttgattggctttctccactttcttcattgaaatatctcttcctt 213  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  18146458 tcttcattggctttctccactttcttccttgaaatatctctccctt 18146503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 18115589 - 18115641
Alignment:
Q  155 ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  18115589 ttcacatggataatcttggttggctttctccacattcttccttgaaatatctc 18115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 19419601 - 19419653
Alignment:
Q  155 ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| ||| ||| ||||||||||||||||||||||||||| || |||||||||    
T  19419601 ttcacatgtataatcttgattggctttctccactttcttccttaaaatatctc 19419653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 19461156 - 19461208
Alignment:
Q  155 ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||    
T  19461156 ttcacatggataatcttggttggctttctccacattcttccttgaaatatctc 19461208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 24493803 - 24493751
Alignment:
Q  155 ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| ||||||| |||| |||||||| ||||||||||||| ||||||||||||    
T  24493803 ttcacatggataatcttcattggcttcctccactttcttcgttgaaatatctc 24493751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 17728060 - 17728013
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  17728060 atggatagtcttcattggctttctccactttcttccttacaatatctc 17728013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 18103059 - 18103106
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||||||||||| | |||||||||||||||||||| || |||||||||    
T  18103059 atggatagtcttcactggctttctccactttcttccttaaaatatctc 18103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 19029289 - 19029242
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  19029289 atggatagtcttcattggctttctccactttcttccttacaatatctc 19029242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 19333638 - 19333685
Alignment:
Q  160 atggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||||||||||| ||||||||||| |||||||||| || |||||||||    
T  19333638 atggatagtcttcattggctttcttcactttcttccttaaaatatctc 19333685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 18022411 - 18022469
Alignment:
Q  149 atggttttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    ||||| |||| || |||| |||||| ||||||||| |||||||||| ||||||||||||    
T  18022411 atggtcttcacatagataatcttgactggctttcttcactttcttccttgaaatatctc 18022469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 17941362 - 17941414
Alignment:
Q  155 ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| ||||||| |||| |||||||||||||| ||||| | ||||||||||||    
T  17941362 ttcacatggataatcttcattggctttctccattttctaccttgaaatatctc 17941414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 457 - 335
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||| | ||||||||||||||||||   |||||||||||||| |||||| |||||  || ||||| ||||||||| | ||||||||    
T  457 attctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacacgttcatcta 358  T
Q  101 aacttgcctaccttgacttatcc 123  Q
    |||||| ||||||||||||||||    
T  357 aacttgtctaccttgacttatcc 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 4873 - 4992
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||| | ||||||||||||||||||   |||||||||||||| |||||| |||||  || ||||| ||||||||| | ||||||||    
T  4873 attctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacacgttcatcta 4972  T
Q  101 aacttgcctaccttgactta 120  Q
    |||||| |||||||||||||    
T  4973 aacttgtctaccttgactta 4992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 5018 - 5076
Alignment:
Q  155 ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctcttcctt 213  Q
    |||| ||||||| |||| ||||||||||| ||||||| || |||||||||||| |||||    
T  5018 ttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatcctt 5076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8458958 - 8459084
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||||||||||| ||||||||||||||||||    || | ||||| ||||||||||||||| | ||||||| ||||||||| ||| ||||||    
T  8458958 attctagaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattcaacacaacatcacacatgcatcta 8459057  T
Q  101 aacttgcctaccttgacttatcctaca 127  Q
    | |||    ||||||||||||||||||    
T  8459058 accttttgcaccttgacttatcctaca 8459084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 13667401 - 13667279
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcattcatcta 100  Q
    |||||| ||||| ||||||| || || |||||||||||    ||||| ||||| ||||||| |||| || ||||||||| |||||||||  |||||||||    
T  13667401 attctagaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaacacaacatcacaaattcatcta 13667302  T
Q  101 aacttgcctaccttgacttatcc 123  Q
    |||||| ||||||||||||||||    
T  13667301 aacttgtctaccttgacttatcc 13667279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 15531836 - 15531962
Alignment:
Q  1 attctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaa---cgcaacatcacgcattcat 97  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||||||||||||| ||| |||| |||||| ||||||||     ||| ||||| |||||||    
T  15531836 attctaaaacttgagtttcttagttacttcgatttgagtcggaatgattttgatgtgctaagcattccatccattcaaaataacaatatcacacattcat 15531935  T
Q  98 ctaaacttgcctaccttgacttatcct 124  Q
    |||| |||   ||||||||||||||||    
T  15531936 ctaaccttttgtaccttgacttatcct 15531962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 15531970 - 15532027
Alignment:
Q  150 tggttttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| |||| ||||||| |||||||||||||||||||||||| || ||||||||||||    
T  15531970 tggtcttcacatggataatcttgattggctttctccactttcatccttgaaatatctc 15532027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 2710953 - 2710909
Alignment:
Q  163 gatagtcttgattggctttctccactttcttcattgaaatatctc 207  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||    
T  2710953 gataatcttaattggctttctccactttcttctttgaaatatctc 2710909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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