View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10545_high_9 (Length: 237)
Name: NF10545_high_9
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 22528253 - 22528466
Alignment:
| Q |
10 |
gcaatagggacaatttcgagttggtttgaatttcggtctctggtttaaaatctcagcattgattcttcctgcaacgatttctatgcatatatctgcatac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22528253 |
gcaatagggacaatttcgagttggtttgaatttcggtctctggtttaaaatctcagcattgattcttcctgcaacgatttctatgcatatatctgcatac |
22528352 |
T |
|
| Q |
110 |
acaaacaaataatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaatttgctcaaattgctcaattgtttttaacctgatac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22528353 |
acaaacaaataatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaatttgctcaaattgctcgattgtttttaacctgatac |
22528452 |
T |
|
| Q |
210 |
aaggatggaagaaa |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22528453 |
aaggatggaagaaa |
22528466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 22515183 - 22515396
Alignment:
| Q |
10 |
gcaatagggacaatttcgagttggtttgaatttcggtctctggtttaaaatctcagcattgattcttcctgcaacgatttctatgcatatatctgcatac |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22515183 |
gcaatagggacaattttgagttggtttgaatttcggtttctggtctaaaatctcagcattgattcttcctgcaacgatttctatgaatatatctgcatac |
22515282 |
T |
|
| Q |
110 |
acaaacaaataatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaatttgctcaaattgctcaattgtttttaacctgatac |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22515283 |
acaaacaaacaatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaaattgcttaaattgctcaattgtttttaacctgatac |
22515382 |
T |
|
| Q |
210 |
aaggatggaagaaa |
223 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
22515383 |
aatgatggaagaaa |
22515396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 22602882 - 22603098
Alignment:
| Q |
10 |
gcaatagggacaatttcgagttggtttgaatttcggtc---tctggtttaaaatctcagcattgattcttcctgcaacgatttctatgcatatatctgca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22602882 |
gcaatagggacaatttcgagttggtttgaatttcggtcgtctctggtttaaaatctcagcattgattcttcctgcaacgatttctacgcatatatctgca |
22602981 |
T |
|
| Q |
107 |
tacacaaacaaataatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaatttgctcaaattgctcaattgtttttaacctga |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
22602982 |
tacacaaacaaacaatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaatttactcaaactgctcgattgtttttaacctga |
22603081 |
T |
|
| Q |
207 |
tacaaggatggaagaaa |
223 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
22603082 |
tacaatgatggaagaaa |
22603098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 22495784 - 22495990
Alignment:
| Q |
10 |
gcaatagggacaatttcgagttggtttgaatttcggtctctggtttaaaatctcagcattgattcttcctgcaacgatttctatgcatatatctgcatac |
109 |
Q |
| |
|
|||||||||||| | | ||||||| ||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22495784 |
gcaatagggacattctggagttggattgaattgcgcattctgggataaaatctcagcgttgattcttcctgcaacgatttctatgaatatatctgcatac |
22495883 |
T |
|
| Q |
110 |
acaaacaaataatacatgtactttagaacaaatgtgagatttatatttgatgaaaattagaaaatttgctcaaattgctcaattg-tttttaacctgata |
208 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||| | ||||| || | ||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
22495884 |
acaaacaaacaatacatgta--ttagaacaaatgtgaga---aaatttgctgta---tagaaaatttgcttaaattgctcaattgttttttaacctgata |
22495975 |
T |
|
| Q |
209 |
caaggatggaagaaa |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22495976 |
caaggatggaagaaa |
22495990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University