View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10545_low_1 (Length: 470)
Name: NF10545_low_1
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 22 - 463
Target Start/End: Complemental strand, 31389908 - 31389466
Alignment:
| Q |
22 |
ccgccaacgtagaagatccaaacttaggagtcaacaactcaaagaaatgattgatgcaatggagaataatgatgtcgttcgagacaattacaaagagagg |
121 |
Q |
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| T |
31389908 |
ccgccaacgtagaggatccaaacttaggagtcaacaactcaaagaaatgattgatgcaatggagaataatgatgtcgttcgagacaattacaaagagagg |
31389809 |
T |
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| Q |
122 |
cttctagaataccataagtatttatagaaatggttctagttttcaaagaagattggcaactctcatttaatccatagggtgtaatgattagttgtttgtc |
221 |
Q |
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| T |
31389808 |
cttctagaataccataagtatttatagaaatggttctagttttgaaagaagattggcaactctcatttaatccatagggtgtaataattagttgtttgtc |
31389709 |
T |
|
| Q |
222 |
gaggagcaataatggagtcatggacaattgcaagaattgttgaagacatggtaaagtcattagaagttaagagtctctaatttgtgtctgaaaaatatac |
321 |
Q |
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| T |
31389708 |
ggggagcaataatggagtcatggacaattgcaagaattgttgaagacatggtaaagtcattagaagttaagagtctctaatttgtgtctgaaaaatatac |
31389609 |
T |
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| Q |
322 |
-acacttgtccttaaaaaatgtatgatatttgtaattgatattgtatttttaaattctcttttatgtaagttgctatccttcttgtaatccttttaagta |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389608 |
aacacttgtccttaaaaaatgtatgatatttgtaattgatattgtatttttaaattctcttttatgtaagttgctatccttcttgtaatccttttaagta |
31389509 |
T |
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| Q |
421 |
tttttgaattcagcattctgttcgacctttctcttctctgctt |
463 |
Q |
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| T |
31389508 |
tttttgaattcagcattctgttcgacctttctcttctctgctt |
31389466 |
T |
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