View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10545_low_11 (Length: 251)

Name: NF10545_low_11
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10545_low_11
NF10545_low_11
[»] chr3 (2 HSPs)
chr3 (1-179)||(41248228-41248403)
chr3 (28-76)||(9408832-9408880)
[»] chr6 (1 HSPs)
chr6 (28-103)||(8400190-8400265)
[»] chr4 (1 HSPs)
chr4 (28-79)||(20510690-20510741)
[»] chr8 (1 HSPs)
chr8 (35-103)||(14633327-14633395)
[»] scaffold0057 (1 HSPs)
scaffold0057 (28-99)||(64664-64735)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 41248228 - 41248403
Alignment:
Q  1 taaacaactatatataagtttctaggctatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41248228 taaacaactatatataagtttctaggctatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatc- 41248326  T
Q  101 aataataattgcatgcgattttgttttcacattcttggtaactacaaacgattttttgggtcaggtctaatgtccccca 179  Q
      ||||||||||||||||||||||||||||| ||| ||  | |||||||||||| || |||||||||||||||||||||    
T  41248327 --taataattgcatgcgattttgttttcacactctcggccattacaaacgatttcttaggtcaggtctaatgtccccca 41248403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 9408832 - 9408880
Alignment:
Q  28 tatataagaatcttaatctttaactagaatttcaaattatgattcttca 76  Q
    |||| ||||||||||||| ||||||||||||  || |||||||||||||    
T  9408832 tatagaagaatcttaatccttaactagaattctaatttatgattcttca 9408880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 8400190 - 8400265
Alignment:
Q  28 tatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatcgaat 103  Q
    |||| |||||| |||||| |||||||||||| ||| ||||||||| |||||   |||||||||||||| |||||||    
T  8400190 tatagaagaatgttaatccttaactagaattccaatttatgattcctcattacaatttcgcttagaaacatcgaat 8400265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 20510741 - 20510690
Alignment:
Q  28 tatataagaatcttaatctttaactagaatttcaaattatgattcttcattg 79  Q
    |||| ||||||||||||||||||||||||||  || ||||||||||||||||    
T  20510741 tatagaagaatcttaatctttaactagaattcaaatttatgattcttcattg 20510690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 14633327 - 14633395
Alignment:
Q  35 gaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatcgaat 103  Q
    |||||||||| ||||||||||||| ||| ||||||| ||||||||  ||||| ||| ||||||| ||||    
T  14633327 gaatcttaatatttaactagaattccaatttatgatacttcattgcaatttccctttgaaatatagaat 14633395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 64664 - 64735
Alignment:
Q  28 tatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatc 99  Q
    |||| ||||||| ||||| |||| ||||||||||  ||||||||| ||||||  ||||||||||| ||||||    
T  64664 tatagaagaatcgtaatccttaaatagaatttcagtttatgattcctcattgcaatttcgcttaggaatatc 64735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University