View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10545_low_19 (Length: 235)
Name: NF10545_low_19
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 46538770 - 46538985
Alignment:
| Q |
13 |
gacatcataaagcatttttcttattaggagtcaatgaaatgttacagtaagaagacatacaaaaaatgaataaattcaggtcacaaaaacacaaccaatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46538770 |
gacatcataaagcatttttcttattaggagtcaatgaaaagttacagtaagaagacatacaaaaaatgaataaattcaggtcacaaaaacacaaccaatg |
46538869 |
T |
|
| Q |
113 |
tcttcctttctaattgtgctctgttgtactagttgggtccaaatctgattttaattcagataactgactaaacaaagacatagtcagagttcccaaaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
46538870 |
tcttcctttctaattgtgctctgttgtactagttgggtccaaatctgattttaattcagataaccgcctaaacaaagacatagtcagagttcccaaaaat |
46538969 |
T |
|
| Q |
213 |
tgcacctatgcttctc |
228 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46538970 |
tgcacctatgcttctc |
46538985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University