View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10545_low_2 (Length: 440)
Name: NF10545_low_2
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 38320648 - 38320243
Alignment:
| Q |
17 |
cagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38320648 |
cagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaa |
38320549 |
T |
|
| Q |
117 |
cagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38320548 |
cagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttat |
38320449 |
T |
|
| Q |
217 |
aggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaaggatcatagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38320448 |
aggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggatcatagaa |
38320349 |
T |
|
| Q |
317 |
gcacaccttttaaccaaccataattgatctatctcgccaatagattccacattttcttgtgatatttcttcaatgtcctaaattacatttcaaaactgtt |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38320348 |
gcacaccttttaactaaccataattgatctatctcgccaatagattccacattttcttgtgatatttcttcaatgtcctaaattacatttcaacactgtt |
38320249 |
T |
|
| Q |
417 |
aattat |
422 |
Q |
| |
|
|||||| |
|
|
| T |
38320248 |
aattat |
38320243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 38305822 - 38305518
Alignment:
| Q |
17 |
cagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaa |
116 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||| ||||||| ||||||| || |||||||| ||||||||||| | |||| |||||||||| ||||| |
|
|
| T |
38305822 |
cagaagttgagaaccttactatttaacttccaatccgcgtcaacaaaatgcgcagtcaaacagatataagtctcagcagtgttagattcccacaaatcaa |
38305723 |
T |
|
| Q |
117 |
cagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| ||||||||||||| |||||||| || |
|
|
| T |
38305722 |
aagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataacatctac |
38305623 |
T |
|
| Q |
217 |
aggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaaggatcatagaa |
316 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38305622 |
aggaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaa |
38305523 |
T |
|
| Q |
317 |
gcaca |
321 |
Q |
| |
|
||||| |
|
|
| T |
38305522 |
gcaca |
38305518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 38316543 - 38316322
Alignment:
| Q |
24 |
tgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaa |
123 |
Q |
| |
|
||||||||||||| || || ||||||||||||||| |||||||||| |||||||||||||||||||| || ||| |||||||||| ||||| |||||| |
|
|
| T |
38316543 |
tgagaaccttactattcaacttccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcagtggtgttagattcccacaaatcaaaagttaa |
38316444 |
T |
|
| Q |
124 |
agatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggc |
223 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||| |||||||||| | ||||| |
|
|
| T |
38316443 |
agatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggt |
38316344 |
T |
|
| Q |
224 |
ataacagcatttggatttaaga |
245 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38316343 |
ataacagcatttggatttaaga |
38316322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 38313141 - 38312910
Alignment:
| Q |
17 |
cagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaa |
116 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||||||||| ||| | |||||||| |||||||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
38313141 |
cagaagttgagaactttactatttaacttccaattcgcatcaacgaaatgagcagtcaaacaaatataagtctcagtagtattagattcccacaaatcaa |
38313042 |
T |
|
| Q |
117 |
cagttaaagatatcctatt----aggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacat |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
38313041 |
aagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaagaacat |
38312942 |
T |
|
| Q |
213 |
ttataggaggcataacagcatttggatttaag |
244 |
Q |
| |
|
|| ||||||||||||| |||||||||||||| |
|
|
| T |
38312941 |
ttgaaggaggcataacaacatttggatttaag |
38312910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 24 - 243
Target Start/End: Complemental strand, 38325388 - 38325169
Alignment:
| Q |
24 |
tgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaa |
123 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||| |||| | |||||||| |||||||||| ||||| |||||| |
|
|
| T |
38325388 |
tgagaaccttactatttaccttccaattcgcgtcaacaaaatgagcggtcagacaaatgtaaggcatagtagtgcaagattcccacaaatcaaaagttaa |
38325289 |
T |
|
| Q |
124 |
agatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggc |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| | ||||||||||| |||||||||| ||||||| |
|
|
| T |
38325288 |
agataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggt |
38325189 |
T |
|
| Q |
224 |
ataacagcatttggatttaa |
243 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
38325188 |
ataacagcatttcgatttaa |
38325169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 26 - 190
Target Start/End: Complemental strand, 38299894 - 38299730
Alignment:
| Q |
26 |
agaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaag |
125 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||| |||||||||||||||| |||||||| |
|
|
| T |
38299894 |
agaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaag |
38299795 |
T |
|
| Q |
126 |
atatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
190 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
38299794 |
atatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcc |
38299730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 38308541 - 38308385
Alignment:
| Q |
31 |
cttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatc |
130 |
Q |
| |
|
|||||| ||||| ||||||| |||| || |||||||||||| |||||||||||||| | ||||| || |||||||||| |||| |||||||||||| |
|
|
| T |
38308541 |
cttactatttaacttccaatccgcgccaacaaaatgagcggataaacaaatataagtgccagtagtacaagattcccacaactcaaaggttaaagatatc |
38308442 |
T |
|
| Q |
131 |
ctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaa |
187 |
Q |
| |
|
||| |||||||||||||| || ||||| ||||| ||||| ||| |||||||||| |
|
|
| T |
38308441 |
ttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 38850806 - 38851023
Alignment:
| Q |
28 |
aaccttactctttaatttccaattcgcgtcagcaaaatgagcggtcaaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagat |
127 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||| ||||| || ||||||| |
|
|
| T |
38850806 |
aaccttactatttaacttccaattcgcgtcaacaaaatgagcagtcaaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagat |
38850905 |
T |
|
| Q |
128 |
atcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataa |
227 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| || || ||||| | ||||||||| ||||||| ||| |
|
|
| T |
38850906 |
atcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatag |
38851005 |
T |
|
| Q |
228 |
cagcatttggatttaaga |
245 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
38851006 |
gaatatttggatttaaga |
38851023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University