View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10545_low_21 (Length: 228)

Name: NF10545_low_21
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10545_low_21
NF10545_low_21
[»] chr3 (2 HSPs)
chr3 (4-67)||(31357232-31357295)
chr3 (17-67)||(31346590-31346640)
[»] chr7 (4 HSPs)
chr7 (17-70)||(2920693-2920746)
chr7 (5-69)||(2926824-2926888)
chr7 (5-68)||(2921542-2921605)
chr7 (37-70)||(2926108-2926141)
[»] chr8 (1 HSPs)
chr8 (103-139)||(13032008-13032044)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 31357295 - 31357232
Alignment:
Q  4 gttttatcatgtatattgtatctattttatccgaacttatctaaatttcagttgtaatatatat 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31357295 gttttatcatgtatattgtatctattttatccgaacttatctaaatttcagttgtaatatatat 31357232  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 31346640 - 31346590
Alignment:
Q  17 tattgtatctattttatccgaacttatctaaatttcagttgtaatatatat 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31346640 tattgtatctattttatccgaacttatctaaatttcagttgtaatatatat 31346590  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 2920693 - 2920746
Alignment:
Q  17 tattgtatctattttatccgaacttatctaaatttcagttgtaatatatatatt 70  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  2920693 tattgtatctattttatctgaacttatctaaatttcagttgtaataaatatatt 2920746  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 2926824 - 2926888
Alignment:
Q  5 ttttatcatgtatattgtatctattttatccgaacttatctaaatttcagttgtaatatatatat 69  Q
    |||||||| || |||||||| ||||||||  | ||||||||| ||||||||||||||||||||||    
T  2926824 ttttatcaggtgtattgtatttattttatatgtacttatctatatttcagttgtaatatatatat 2926888  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 2921542 - 2921605
Alignment:
Q  5 ttttatcatgtatattgtatctattttatccgaacttatctaaatttcagttgtaatatatata 68  Q
    |||||||| || |||||| ||||||||||  | ||||||||||||||||| |||||||||||||    
T  2921542 ttttatcaggtgtattgtgtctattttatatgtacttatctaaatttcagctgtaatatatata 2921605  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 2926108 - 2926141
Alignment:
Q  37 aacttatctaaatttcagttgtaatatatatatt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  2926108 aacttatctaaatttcagttgtaataaatatatt 2926141  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 13032008 - 13032044
Alignment:
Q  103 aatttgatcttgaccgtgtattttgatccaatggata 139  Q
    |||||||||||| ||||||||||||||||||||||||    
T  13032008 aatttgatcttggccgtgtattttgatccaatggata 13032044  T

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