View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10545_low_3 (Length: 378)
Name: NF10545_low_3
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 48752718 - 48752937
Alignment:
| Q |
12 |
atgaagcaacattctcctcagaggaagataaacaaagaacgttcaactggttccgtaaaacttatatctacggtcgtgaatttccttgcggtgctgcccc |
111 |
Q |
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| T |
48752718 |
atgaagcaacattctcctcagaggaagataaacaaagcacgttcaactggttccgtaaaacttatatctacggtcgtgaatttccttgtggtgctgcccc |
48752817 |
T |
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| Q |
112 |
tcccgtgcatcgcaaagatatcatagattgccttcggagatatggaatacatggagacagtaaagtgatgtatgagtttttgttggaaagatcgaggtgc |
211 |
Q |
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| T |
48752818 |
tcccgtgcatcgcaaagatatcatagattgccttcggagat---------atggagacagtaaagtgatgtatgagtttttgttggaaagatcgaggtgc |
48752908 |
T |
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| Q |
212 |
acatacgaacttacataagactgaaggat |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
48752909 |
acatacgaacttacataagactgaaggat |
48752937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 48752972 - 48753060
Alignment:
| Q |
275 |
catcttagtttgctttcctaattaatttcttataatgatggtggctttaagtttgagttccgaagtaagagtagtaatatgctacatgt |
363 |
Q |
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| T |
48752972 |
catcttagtttgctttcctaattaatttcttataatgatggtggctttaagtttgagttccgaagtaagagtagtaatatgctacatgt |
48753060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 52083681 - 52083482
Alignment:
| Q |
15 |
aagcaacattctcctcagaggaagataaacaaagaacgttcaactggttccgtaaaacttatatctacggtcgtgaatttccttgcggtgctgcccctcc |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
52083681 |
aagcaacattctcctcagaggaagataaacaaatcacgttcaactggttccgtaaaacttatatctacggtcgtgaatttccttgtgctgctgcccctcc |
52083582 |
T |
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| Q |
115 |
cgtgcatcgcaaagatatcatagattgccttcggagatatggaatacatggagacagtaaagtgatgtatgagtttttgttggaaagatcgaggtgcaca |
214 |
Q |
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||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52083581 |
cgttcatctcaaagatatcatagattgcattcggagatatggaatacatggagacagtaaagtgaagtatgagtttttgttggaaagatcgaggtgcaca |
52083482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 52093044 - 52092845
Alignment:
| Q |
15 |
aagcaacattctcctcagaggaagataaacaaagaacgttcaactggttccgtaaaacttatatctacggtcgtgaatttccttgcggtgctgcccctcc |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
52093044 |
aagcaacattctcctcagaggaagataaacaaaccacgttcaactggttccgtaaaacttatatctacggtcgtgaatttccttgtgctgctgcccctcc |
52092945 |
T |
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| Q |
115 |
cgtgcatcgcaaagatatcatagattgccttcggagatatggaatacatggagacagtaaagtgatgtatgagtttttgttggaaagatcgaggtgcaca |
214 |
Q |
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||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52092944 |
cgttcatctcaaagatatcatagattgcattcggagatatggaatacatggagacagtaaagtgaagtatgagtttttgttggaaagatcgaggtgcaca |
52092845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 363
Target Start/End: Complemental strand, 52092759 - 52092671
Alignment:
| Q |
275 |
catcttagtttgctttcctaattaatttcttataatgatggtggctttaagtttgagttccgaagtaagagtagtaatatgctacatgt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
52092759 |
catcttagtttgctttcctaattaatttcttataatggtggtggctttaagtttgagttccgtagtaagagtggtaatatgctacatgt |
52092671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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