View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10545_low_4 (Length: 374)
Name: NF10545_low_4
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 38447732 - 38447379
Alignment:
| Q |
1 |
agtggaggcagatctgattgcattttcatgcaagtatctaaggcatcattaacatcgcatggaagcttgtcatgcaagttattgtcatcgtcattgacta |
100 |
Q |
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||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38447732 |
agtggaggcagatctgactgcattgccatgcaagtgtctaaggcatcactaacatcgtatggaagcttgtcatgcaagttattgtcatcgtcattcacta |
38447633 |
T |
|
| Q |
101 |
atgtgctgaacatgtcatcccaaagttccgtattcattatgtcttcatggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatc |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447632 |
atgtgctgaacatgtcatcccaaagttccggattcattatgtcgtcatggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatc |
38447533 |
T |
|
| Q |
201 |
aaccaaatttgtctcaaagtgcatgcgaatagtatccaagctttcccaattctcttgtgtatataacatagacttcaatgaaccacttttatatggagaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38447532 |
aaccaaatttgtctcaaagtgcatgcgaatagtatccaagctttcccaattctcttgtgtatataacatagactccaatgaaccacttttatatggagaa |
38447433 |
T |
|
| Q |
301 |
attgattgtgacaatgacaactgatattgagtctccataggttgtggattctgaggatag |
360 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447432 |
attgattgtg------acaactgatattgagtctccataggttgtggattctgaggatag |
38447379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 68 - 360
Target Start/End: Complemental strand, 38343472 - 38343186
Alignment:
| Q |
68 |
tgtcatgcaagttattgtcatcgtcattgactaatgtgctgaacatgtcatcccaaagttccgtattcattatgtcttcatggtttacttcaacatcgct |
167 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
38343472 |
tgtcatgcaagttattgtcatcgtcattcactaatgtgctgaacatgtcatcccaaagttccggattcattatgtcgtcatggtttacttcaacatcgct |
38343373 |
T |
|
| Q |
168 |
ctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctcaaagtgcatgcgaatagtatccaagctttcccaattctcttgtgtatataac |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38343372 |
ctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctcaaagtgcatgcgaatagtatccaagctttcccaattctcttgtgtatataac |
38343273 |
T |
|
| Q |
268 |
atagacttcaatgaaccacttttatatggagaaattgattgtgacaatgacaactgatattgagtctccataggttgtggattctgaggatag |
360 |
Q |
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| T |
38343272 |
atagactccaatgaaccacttttatatggagaaattgattgtg------acaactgatattgagtctccataggttgtggattctgaggatag |
38343186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 359
Target Start/End: Original strand, 53350960 - 53351167
Alignment:
| Q |
149 |
ggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctcaaag---tgcatgcgaatagtatccaagctttc |
245 |
Q |
| |
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||||| ||||||||||| || | |||||||| ||||||| ||||| ||||||||||||||| |||| || |||| ||| ||| ||| |||| ||| |
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| T |
53350960 |
ggtttgcttcaacatcgtccttcaaagaaattggcttctttcctttttcatcaaccaaatttagctcagaggagtgcacacgactagcatcgaagccttc |
53351059 |
T |
|
| Q |
246 |
ccaattctcttgtgtatataacatagacttcaatgaaccacttttatatggagaaattgattgtgacaatgacaactgatattgagtctccataggttgt |
345 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| || |
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| T |
53351060 |
ccaattctcttgtctataaaacatagacttcaatgaaccacttttatatggagaacttgatt------ctgacatctgatattgagtctccataggtggt |
53351153 |
T |
|
| Q |
346 |
ggattctgaggata |
359 |
Q |
| |
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||| | |||||||| |
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| T |
53351154 |
ggaatttgaggata |
53351167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 38448067 - 38447947
Alignment:
| Q |
147 |
atggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctcaaag---tgcatgcgaatagtatccaagctt |
243 |
Q |
| |
|
||||||| |||||| |||| |||||||||||| | |||||||||||| |||||||| |||||| ||| | || | || |||| ||| |||||| | | |
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| T |
38448067 |
atggtttccttcaaaatcgttctccgaagaaactggcttcttcccttcttcatcaacaaaatttatcttagaggaattcacgcgactagcatccaaacct |
38447968 |
T |
|
| Q |
244 |
tcccaattctcttgtgtatat |
264 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
38447967 |
tcccaattctcttctgtatat |
38447947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 38447932 - 38447891
Alignment:
| Q |
315 |
tgacaactgatattgagtctccataggttgtggattctgagg |
356 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
38447932 |
tgacatctgatattgagtctccataggtggtggattctgagg |
38447891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 26032718 - 26032785
Alignment:
| Q |
149 |
ggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctca |
216 |
Q |
| |
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||||| ||||||||||| |||| | ||||| ||||||||||||| |||||||| |||||||||||| |
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| T |
26032718 |
ggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacgaaatttgtctca |
26032785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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