View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10545_low_5 (Length: 370)
Name: NF10545_low_5
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 36674782 - 36675141
Alignment:
| Q |
11 |
cagagagatcaatgttggtaacatacgaaagtatacttgatatatcttcagagatgggtcctgaaagctcgttgattgaaaggtctaagcctgttatcga |
110 |
Q |
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| T |
36674782 |
cagagagatcaatgttggtaacatacgaaagtatacttgatatatcttcagagatgggtcctgaaagcacgttgattgaaaggtctaagcctgtcatcga |
36674881 |
T |
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| Q |
111 |
agagcgattcacaagtccctgtggaaactgacccttcaacccgaagctggatagtttgagatttagtactttattctcatctggatgccaacattcaaca |
210 |
Q |
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| T |
36674882 |
agagcgattcacaagtccctgtggaaactgacccttcaacccgaagctggatagtttgagatttagtactttattctcatctggatgccaacattcaaca |
36674981 |
T |
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| Q |
211 |
ccattaaatctacatatgaaaccttctgttttgttgttgaagttccagcttgaggttaagtaatcatttgggtcttccttctgtttgcaaaagtctttaa |
310 |
Q |
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| T |
36674982 |
ccattaaatctacatatgaaaccttctgttttgttgttgaagttccagcttgaggttaagtaatcatttgggtcctccttctgtttgcaaaagtctttaa |
36675081 |
T |
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| Q |
311 |
aatgttcgtatcttacaaagtcaatctcaataaaaacactatcataatttacttgacaac |
370 |
Q |
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| T |
36675082 |
aatgttcgtatcttacaaagtcaatctcaataaaaacactatcataatttacttgacaac |
36675141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 63 - 258
Target Start/End: Original strand, 36677582 - 36677777
Alignment:
| Q |
63 |
gatgggtcctgaaagctcgttgattgaaaggtctaagcctgttatcgaagagcgattcacaagtccctgtggaaactgacccttcaacccgaagctggat |
162 |
Q |
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| T |
36677582 |
gatggatcctgagaggtcattgaccgaaaggtctaagcccgtcaacgaagagcaattttcaagtcctcgtggaaactgacccttcaaccccatgttagat |
36677681 |
T |
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| Q |
163 |
agtttgagatttagtactttattctcatctggatgccaacattcaacaccattaaatctacatatgaaaccttctgttttgttgttgaagttccag |
258 |
Q |
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| T |
36677682 |
agtttgagatttagtactctattttcatctggatgccagcattcaacaccagtaaatttacatatgaaaccttctgttctgttgttgaagtcccag |
36677777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 36694755 - 36694818
Alignment:
| Q |
304 |
tctttaaaatgttcgtatcttacaaagtcaatctcaataaaaacactatcataatttacttgaca |
368 |
Q |
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| T |
36694755 |
tctttaaaatgttactatct-acaaagtcaatctaaaggaaaacactatcataatttacttgaca |
36694818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 2605186 - 2605089
Alignment:
| Q |
160 |
gatagtttgagatttagtactttattctcatctggatgccaacattcaacaccattaaatctacatatgaaaccttctgttttgttgttgaagttcca |
257 |
Q |
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| T |
2605186 |
gataatttgagattcaagactttattctcatcaggatgccagcattcaacaccattaaatctacatataaacccttcagttttattgttgaaattcca |
2605089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 32781885 - 32781955
Alignment:
| Q |
160 |
gatagtttgagatttagtactttattctc-atctggatgccaacattcaacaccattaaatctacatatga |
229 |
Q |
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| T |
32781885 |
gatagtttgagatttagtgctttattttttatctggattgcaacattcagcactattaaatctacatatga |
32781955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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