View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10545_low_6 (Length: 311)
Name: NF10545_low_6
Description: NF10545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10545_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6849587 - 6849879
Alignment:
| Q |
1 |
atgaagttcttaaaaaactagcaactaaaccgaaatctcctttgtactcttttgttcagtcatggccatcttacttctgttgaggaaaaattccactccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6849587 |
atgaagttcttaaaaaactagcaactaaaccgaaatctcctttgtactcttttgttcagtcatggccatcttacttctgttgaggaaaaattccactccc |
6849686 |
T |
|
| Q |
101 |
caaataaccaaccttatcgtgaggcaaaaaccaagaattgataacaatcgaatccaagtaaaaaccaacttctcaagaaacttgttagctttttcgaaaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6849687 |
caaataaccaaccttattgtgaggcaaaaaccaagaattgataacaatcgaatccaagtaaaaaccaacttctcaagaaacttgttagctttttcgaaaa |
6849786 |
T |
|
| Q |
201 |
caggatctggtgtgctcatttgcaaatgttatatnnnnnnngagcaagacttgtgagagttatacacatccctattgctaacatccacataggt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6849787 |
caggatctggtgtgctcatttgcaaatgttata-aaaaaaagagcaagacttgtgagagttatacacatccctattgctaacatccacataggt |
6849879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University