View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_high_12 (Length: 228)
Name: NF10546_high_12
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 18687887 - 18688098
Alignment:
| Q |
1 |
aaacagctcaggttggctctgagtgttgtttagacaacgaacaaagaatgcttggtaccgtgttgaccaattctggtattgatgaaaattcaaatcaaaa |
100 |
Q |
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| T |
18687887 |
aaacagctcaggttggctctgagtgttgtttagacaacgaacaaagaatgcttggtaccgtgttgaccaattctggtattgatgaaaattcaaat--taa |
18687984 |
T |
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| Q |
101 |
gtttctgtgaatatgatggaaaattttgttattcaactgcctgaactacctcatcctttctaagaaaattcttgccagactttagaaggttcatgtattc |
200 |
Q |
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| T |
18687985 |
gtttctgtgaatatgatgggaaattttgttattcaactgcctgaactacctcatcctttctaag-aaattcttgccagactttagaaggttcatgtattc |
18688083 |
T |
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| Q |
201 |
aacaaagtacctctg |
215 |
Q |
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| T |
18688084 |
aacaaagtacctctg |
18688098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 48447727 - 48447864
Alignment:
| Q |
1 |
aaacagctcaggttggctctgagtgttgtttagacaacgaacaaagaatgcttggtaccgtgttgaccaattctggtattgatgaaaattcaaatcaaaa |
100 |
Q |
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||||| |||||||||||||||| |||| ||||||| |||||||| |||||||||| || | ||| |||||| ||| |||||||| |||||| || |
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| T |
48447727 |
aaacaactcaggttggctctgaatgtt---tagacaaagaacaaagtgtgcttggtactgtagtaaccgattctgttatcgatgaaaaatcaaat--aat |
48447821 |
T |
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| Q |
101 |
gtttctgtgaatatgatggaaaattttgttattcaactgcctg |
143 |
Q |
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| T |
48447822 |
atttcggtgaatatgactgagaattctgttattcaactgcctg |
48447864 |
T |
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