View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10546_high_2 (Length: 412)

Name: NF10546_high_2
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10546_high_2
NF10546_high_2
[»] chr6 (7 HSPs)
chr6 (12-397)||(33575808-33576193)
chr6 (231-395)||(33568841-33569005)
chr6 (12-397)||(5978665-5979050)
chr6 (219-387)||(19746751-19746919)
chr6 (233-387)||(34861928-34862082)
chr6 (26-95)||(33568636-33568705)
chr6 (65-111)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (19-397)||(36339760-36340138)
chr3 (218-294)||(25901429-25901505)
chr3 (218-294)||(25915447-25915523)
[»] scaffold0707 (2 HSPs)
scaffold0707 (231-395)||(5235-5399)
scaffold0707 (26-95)||(5030-5099)
[»] chr5 (1 HSPs)
chr5 (235-397)||(23086643-23086805)
[»] chr1 (2 HSPs)
chr1 (39-89)||(17954036-17954086)
chr1 (51-98)||(39379422-39379469)
[»] chr7 (8 HSPs)
chr7 (219-268)||(26237459-26237508)
chr7 (39-89)||(24035416-24035466)
chr7 (50-108)||(26237278-26237336)
chr7 (231-268)||(24016646-24016683)
chr7 (50-95)||(26229881-26229926)
chr7 (219-268)||(26256620-26256669)
chr7 (344-388)||(24021738-24021782)
chr7 (51-95)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (221-269)||(25376921-25376969)
[»] chr8 (3 HSPs)
chr8 (343-387)||(11339476-11339520)
chr8 (343-387)||(11345158-11345202)
chr8 (343-387)||(11359036-11359080)
[»] chr4 (2 HSPs)
chr4 (51-99)||(3557388-3557436)
chr4 (218-294)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 33575808 - 33576193
Alignment:
Q  12 agagatcgagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctatt 111  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33575808 agagatcgagaacaaaagtttatggagaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctatt 33575907  T
Q  112 ttgggaaatgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactctta 211  Q
    |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575908 ttgggaaatgatggtgttcattttagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactctta 33576007  T
Q  212 ttggtcctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatga 311  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33576008 ttggtcctgttgagaaatgtgtgattgtttcgcttgatcttttgacagagacatacacacaatttttgcttcctacgggttttaaggagctgccttatga 33576107  T
Q  312 taagccatcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaagg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33576108 taagccatcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaagg 33576193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 395
Target Start/End: Original strand, 33568841 - 33569005
Alignment:
Q  231 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagtt 330  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |||| | ||    |||||| ||||  ||     
T  33568841 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgccatgtgtggtgccatctgttcaggta 33568940  T
Q  331 ctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaa 395  Q
    |||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||    
T  33568941 ctgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaa 33569005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 5978665 - 5979050
Alignment:
Q  12 agagatcgagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctatt 111  Q
    ||||| ||||| | ||||||||||||||||||||||    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| ||    
T  5978665 agagaccgagaccgaaggtttatggagaagcaaggtgagggttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctctt 5978764  T
Q  112 ttgggaaatgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactctta 211  Q
     | || |||||||||||  |||  ||||||||  |||| ||| ||||||||||| ||||||| |    | ||   | ||||| |||| || || ||   |    
T  5978765 atcgggaatgatggtgtgcatttgagtggaacggttaattggctagctattcacggtgactatgttggactttctgatggagaaacagttcaagcttcaa 5978864  T
Q  212 ttggtcctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatga 311  Q
    ||  ||  ||| || ||| |||||||| ||| ||||||||||| |||||||| ||||  |   |||||||||| |||| |||||| ||| |||| |  |     
T  5978865 ttcctcacgttcagcaatttgtgattgcttctcttgatctttcaacagagacgtacaaccggcttttgcttccaaaggattttaatgaggtgccatgcgt 5978964  T
Q  312 taagccatcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaagg 397  Q
    | |||||||  |||| ||||||||||| || ||||| |||||||| ||||| ||| |||| ||||||||||||||| |||||||||    
T  5978965 tgagccatctcttcgggttctgatggattgtctttgcttttcgcatgatttcaagagaaccgaatttgttatatggctgatgaagg 5979050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 387
Target Start/End: Complemental strand, 19746919 - 19746751
Alignment:
Q  219 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagcca 318  Q
    ||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||    |||||| | ||  | ||  |   | |||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgctgccatttggttttgatgaagtcccacactttcagcca 19746820  T
Q  319 tcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatgg 387  Q
     |  |||  |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  19746819 actcttcatgttctgatggactgcctttgcttttcgcacgatttcaagggaactgaatttgttatatgg 19746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 387
Target Start/End: Complemental strand, 34862082 - 34861928
Alignment:
Q  233 tgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttct 332  Q
    |||||| ||||||||||||||| || |||||||||| | | || |||||||| ||||||||||| ||| |||| | || | ||||||   |||| |||||    
T  34862082 tgattgcttcgcttgatctttccaccgagacatacaaatatttgttgcttcccaagggttttaaagagttgccatgtgctgagccatatcttcgggttct 34861983  T
Q  333 gatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatgg 387  Q
    | |||| |||||||| |||| ||| ||||||| |  |||||||||||||||||||    
T  34861982 gttggattgcctttgctttttgcatgattttaggaaaactgaatttgttatatgg 34861928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 33568636 - 33568705
Alignment:
Q  26 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 95  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568636 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  65 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 111  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 36339760 - 36340138
Alignment:
Q  19 gagaacaaaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaa 118  Q
    |||||| || |||||||||||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |    
T  36339760 gagaacgaaagtttatggagaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatgga 36339859  T
Q  119 atgatggtgtatattgtagtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcc 218  Q
    ||||||||||  |||  |||||| ||||||||||||| ||| ||    | |||| || | |||||||   ||||| ||||  |||| ||  ||||  ||     
T  36339860 atgatggtgtgcatttgagtggagctattaactggttggctctttctggcgacttcgtatcaattgattgtggagaaacaagtaaagcttatattcctct 36339959  T
Q  219 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagcca 318  Q
    ||||||| |||  |||||||||||||||||||||||||| ||||||||||  || ||||||||||||   |||||||||||| |||| |  | | |||||    
T  36339960 tgttgagcaattggtgattgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgccatgcgttgagcca 36340059  T
Q  319 tcagttcgagttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaagg 397  Q
    ||  |||| |||||||||||||||||||| ||||| |||||||| ||| ||||||||||||| ||||||  ||||||||    
T  36340060 tctcttcgggttctgatggactgcctttgcttttcacacgatttcaagagaactgaatttgtgatatggcagatgaagg 36340138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 25901505 - 25901429
Alignment:
Q  218 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 294  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25901505 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggtttt 25901429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 25915523 - 25915447
Alignment:
Q  218 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 294  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25915523 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 25915447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 395
Target Start/End: Original strand, 5235 - 5399
Alignment:
Q  231 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagtt 330  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |||| | ||    |||||| ||||  ||     
T  5235 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgccatgtgtggtgccatctgttcaggta 5334  T
Q  331 ctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaa 395  Q
    |||||||||||  ||||||||||||||||||| ||| | ||||||||||| ||||||| ||||||    
T  5335 ctgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaa 5399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 5030 - 5099
Alignment:
Q  26 aaggtttatggagaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagttt 95  Q
    |||||||||||||||   ||||   |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5030 aaggtttatggagaaatgaggtgcgagttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 397
Target Start/End: Original strand, 23086643 - 23086805
Alignment:
Q  235 attgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataagccatcagttcgagttctga 334  Q
    ||||||||||||||||| || || ||||||||||  || || ||||| ||| | |||||| | ||| ||||  |  || |||||||  |||  |||||||    
T  23086643 attgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctcttcatgttctga 23086742  T
Q  335 tggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaagg 397  Q
     |||||||||||| |||||||| |||||||||   | ||||||||||||||||  ||||||||    
T  23086743 aggactgcctttgcttttcgcatgattttaagacgattgaatttgttatatggcagatgaagg 23086805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  39 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 89  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  51 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 98  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 26237459 - 26237508
Alignment:
Q  219 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 268  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  39 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 89  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  50 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 108  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 24016646 - 24016683
Alignment:
Q  231 tgtgattgtttcgcttgatctttcgacagagacataca 268  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  24016646 tgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  50 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 95  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 26256620 - 26256669
Alignment:
Q  219 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 268  Q
    ||||||| ||| ||||||| |||||||||||||||| || ||||||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 24021738 - 24021782
Alignment:
Q  344 tttgtttttcgcacgattttaagggaactgaatttgttatatgga 388  Q
    |||| |||||||||||||| ||| |||||||||||||||| ||||    
T  24021738 tttgcttttcgcacgatttcaagagaactgaatttgttatttgga 24021782  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  51 agttttcaatttgggtgataattgttggagaaatattcaaagttt 95  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 25376921 - 25376969
Alignment:
Q  221 ttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacac 269  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacac 25376969  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 11339520 - 11339476
Alignment:
Q  343 ctttgtttttcgcacgattttaagggaactgaatttgttatatgg 387  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||    
T  11339520 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatgg 11339476  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 11345202 - 11345158
Alignment:
Q  343 ctttgtttttcgcacgattttaagggaactgaatttgttatatgg 387  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||    
T  11345202 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatgg 11345158  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 11359080 - 11359036
Alignment:
Q  343 ctttgtttttcgcacgattttaagggaactgaatttgttatatgg 387  Q
    ||||| |||||||||||||| |||| |||| ||||||||||||||    
T  11359080 ctttgcttttcgcacgatttcaaggaaactcaatttgttatatgg 11359036  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  51 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 99  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 10571502 - 10571426
Alignment:
Q  218 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 294  Q
    |||||||| ||| |||||||||||| |||||||| || || ||| |||||||  |||| |||||||||  |||||||    
T  10571502 ctgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggtttt 10571426  T

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