View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_high_4 (Length: 363)
Name: NF10546_high_4
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 1325579 - 1325252
Alignment:
| Q |
14 |
atcattaacatccggcatattacctgcaagagatttatctgaaacaaatccatctctcctccctgttggaacttgatatgcaggtccatttgcctacatg |
113 |
Q |
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| T |
1325579 |
atcattaacatccggcatattacctgcaagagatttatctgaaacaaatccatctctcctccctgttggaacttgatatgcaggtccatttgcctacatg |
1325480 |
T |
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| Q |
114 |
taacagttaatgcagaagcattaaacttcttgaagaagnnnnnnngctttgtggacaatactagagaatgaaatataatagagtaagttaggaattagga |
213 |
Q |
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| T |
1325479 |
taacagttaatggagaagcattaaacttcttgaagaagaaaaaaagctttgtggacaatactagagaatgaaatataatagagtaagttaggaattagga |
1325380 |
T |
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| Q |
214 |
ccatgacaattgcatctcttgctgccaatgcaacaatatctgcacaagaaaccactcctggacaggatgcttctaattgtgccttggctctttctatcac |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1325379 |
ccatgacaattgcatctctagctgccaatgcaacaatatctgcacaagaaaccactcctggacaggatgcttctaattgtgccttggctctttctatcac |
1325280 |
T |
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| Q |
314 |
ttcaaatcctttaacacctgcatgtgga |
341 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1325279 |
ttcaaatcctttaacacctgcatgtgga |
1325252 |
T |
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