View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_1 (Length: 425)
Name: NF10546_low_1
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 43365261 - 43365654
Alignment:
| Q |
15 |
aacctgtgtaatgcaattaaatgttattcaatcatatggcatcaacacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaatt |
114 |
Q |
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| T |
43365261 |
aacctgtgtaatgcaattaaatgttattcaatcatatggcatcaacacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaatt |
43365360 |
T |
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| Q |
115 |
ttattaataaaattgaggcacacaattttgatgaaagcttccaattagggacctttaatgaaacacttacacgtttcttgatcagcactggtaaaacacg |
214 |
Q |
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| T |
43365361 |
ttattaataaaattgaggcacacaattttgatgaaagcttccaattagggacctttaattaaacacttacacgtttcttgatcagcactggtaaaacacg |
43365460 |
T |
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| Q |
215 |
accctcgtagcatttgggggtgcatttccttggaacacgcactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatg |
314 |
Q |
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| T |
43365461 |
accctcgtagcatttgggggtgcatttccttggaacacgcactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatg |
43365560 |
T |
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| Q |
315 |
tcattccggagggatgttataaaccaatcggcatcaaataattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaag |
408 |
Q |
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| T |
43365561 |
tcattccggagggatgttataaaccaatcggcatcaaataattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaag |
43365654 |
T |
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