View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_10 (Length: 253)
Name: NF10546_low_10
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 47551499 - 47551640
Alignment:
| Q |
110 |
cattttgaagacaaatgcatcattgtgtgtgc---tagacactatccatttgatctcgtccgcaactacctacttattcctattggctacttaaaccatg |
206 |
Q |
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| T |
47551499 |
cattttgaagacaaatacatcattgtgtgtgcgcctaaacactatgtatttgatcccgtccgcaactaccttctaattcctattggctacttaaaccatg |
47551598 |
T |
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| Q |
207 |
accacccatgttttccatgaaatccagaactctctgcttctc |
248 |
Q |
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| T |
47551599 |
accacccatgttttccatgaaatccggaactctatgcttctc |
47551640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 36451343 - 36451406
Alignment:
| Q |
18 |
agtcttctataatcataagaccatatatatagtgtttagacacacgtataaagagacatttttt |
81 |
Q |
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| T |
36451343 |
agtcttctatggtcataagatcatatatatagtgtttatgcacacatacaaagagacatttttt |
36451406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 8009656 - 8009712
Alignment:
| Q |
25 |
tataatcataagaccatatatatagtgtttagacacacgtataaagagacatttttt |
81 |
Q |
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| T |
8009656 |
tataatcacaagaccaaatatatagtggttagacacacatataaagagacatttttt |
8009712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 11577601 - 11577558
Alignment:
| Q |
186 |
ctattggctacttaaaccatgaccacccatgttttccatgaaat |
229 |
Q |
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| T |
11577601 |
ctattggctactcaaaccatgaccacctatgttttccatgaaat |
11577558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 32019074 - 32019113
Alignment:
| Q |
42 |
atatatagtgtttagacacacgtataaagagacatttttt |
81 |
Q |
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| T |
32019074 |
atatacagtgtttagacacacatataaagagacatttttt |
32019113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30204267 - 30204205
Alignment:
| Q |
20 |
tcttctataatcataagaccatatatatagtgtttagacacacgtataaagagacattttttc |
82 |
Q |
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| T |
30204267 |
tcttctatggtcacaagaccatatgtatagtgtttaggcacacatgcaaagagacattttttc |
30204205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 52216180 - 52216127
Alignment:
| Q |
18 |
agtcttctataatcataagaccatatatatagtgtttagacacacgtataaaga |
71 |
Q |
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| T |
52216180 |
agtcttctatggtcacaagaccaaatatatagtgtttagacacacatacaaaga |
52216127 |
T |
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