View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_12 (Length: 238)
Name: NF10546_low_12
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17074442 - 17074219
Alignment:
| Q |
1 |
ttttatccaatgttttagttatcaaaatcgtcgttgtcatgcagctcttatggttagaactgcttgcttttcaacatacatttctctcgtttccaatcat |
100 |
Q |
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| T |
17074442 |
ttttatccaatgttttagttatcaaaatcgtcgttgtcatgcagctcttatggttagaactgctagcttttcaacatacatttctctcgtttccaatcat |
17074343 |
T |
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| Q |
101 |
agaatt-nnnnnnnnctatatattatatcctaaaagaggcataataattgggtgtatatatgttctttattcttaccaatttacaatttggaccaaattt |
199 |
Q |
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| T |
17074342 |
agaattaaaaaaactatatatattatatgctaaaagaggcataatacttgggtgtatatatgtcctttattcttaccaatttacaatttggaccaaattt |
17074243 |
T |
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| Q |
200 |
tcgatgagcaataatcaaaggctt |
223 |
Q |
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|||||||||||||||| ||||||| |
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| T |
17074242 |
tcgatgagcaataatcgaaggctt |
17074219 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 34088585 - 34088510
Alignment:
| Q |
31 |
tcgttgtcatgcagctcttatggttagaactgcttgcttttcaacatacatttctctcgtttccaatcatagaatt |
106 |
Q |
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| T |
34088585 |
tcgttgttatgcaactattattgtaagaactacttgatttgcaacatacatttctctcgcttccaatcatagaatt |
34088510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 29477411 - 29477485
Alignment:
| Q |
31 |
tcgttgtcatgcagctcttatggttagaactgcttgcttttcaacata--catttctctcgtttccaatcatagaatt |
106 |
Q |
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| T |
29477411 |
tcgttgtcatgaaactcttattgt---aactgcttgctttgcaacaaagacatttctctcgtttccaatcatagaatt |
29477485 |
T |
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