View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_18 (Length: 219)
Name: NF10546_low_18
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 16006479 - 16006668
Alignment:
| Q |
14 |
aagaaatgcacaaatgaatttagccattgtggtctggtttgtctttcactcttgcccttgtgcatagtctttggttgaggcacctagttatattatatag |
113 |
Q |
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| T |
16006479 |
aagaaatgcacaaatgaatttagccattgtggtctggtttgtctttcactcttgcccttgtacatagtctttggttgaggcacctagttatattatatag |
16006578 |
T |
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| Q |
114 |
aggcaaatgatgacacagtacaattagtgaggtttgagtcaaaagaaaaatacaactattgagtttcttaactctcggatatcttcaatg |
203 |
Q |
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| T |
16006579 |
aggcaaatgatgacacagtacaattagtgaggtttgagtcaaaagaaaaatacaactattgagtttcttaactctcggatatcttcaatg |
16006668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 16046570 - 16046425
Alignment:
| Q |
14 |
aagaaatgcacaaatgaatttagccattgtggtctggtttgtctttcactcttgcccttgtgcatagtctttggttgaggcacctagttatattatatag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||| || |||||||| |
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| T |
16046570 |
aagaaatgcacaaatgaatttagccattgtggtctggtttgtctttcactcttgctcttgtacatagtctctggttggggcagagag-----ttatatag |
16046476 |
T |
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| Q |
114 |
aggcaaatgatgacacagtacaattagtgagg-tttgagtcaaaagaaaaa |
163 |
Q |
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| T |
16046475 |
aggcaaatgataacacagttcaatgaacgaggttttaagtcaaaagaaaaa |
16046425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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