View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_3 (Length: 392)
Name: NF10546_low_3
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 365
Target Start/End: Complemental strand, 4283489 - 4283151
Alignment:
| Q |
24 |
aattttactttttaatgcttgtttttgaaattatatagctttgctagnnnnnnnnatcaatctttgttgnnnnnnnacttattattgcctattctacatt |
123 |
Q |
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| T |
4283489 |
aattttactttttaatgtttgtttttagaattatataactttgctagttttt---atcaatctttgttgttatttta-ttattattgcctattctacatt |
4283394 |
T |
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| Q |
124 |
cacttaactcatatataattttagtttgatttcatagctatagctcttcatataagcaaattgtgggtttcaaaatgtcttttaccgtcaggctacaaca |
223 |
Q |
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| T |
4283393 |
cacttaactcatctataattttagtttgatttcatagttatagctcttcatataagcaaattgtgggtttcaaaatgccttttaccgtcaggctacaaca |
4283294 |
T |
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| Q |
224 |
tagtttaattctacttcttat-ttttcaaattgaaattttagaacttaaacataattataattaatatcaatagaattttcaccttcacatatcacatga |
322 |
Q |
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| T |
4283293 |
tagtttaattcttcttcttattttttcaaattgaaattttagaacttaaacataattataattaatatcaatagaattttcaccttcacacatcacatga |
4283194 |
T |
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| Q |
323 |
gtgataacctctactgcatcaattatgttaactacaacattta |
365 |
Q |
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| T |
4283193 |
gtgataatctctactgcatcaattatgttaagcacaacattta |
4283151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 100 - 369
Target Start/End: Complemental strand, 4240793 - 4240523
Alignment:
| Q |
100 |
acttattattgcctattctacattcacttaactcatatataattttagtttgatttcatagctatagctcttcatataagcaaattgtgggtttcaaaat |
199 |
Q |
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| T |
4240793 |
acttattattgcctattctacattcacttaactcatctataattttagtttcatttcatagctacaactcttcatataagcaaattgtgggtttcaaaat |
4240694 |
T |
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| Q |
200 |
gtcttttaccgtcaggctacaacatagtttaattctacttcttat-ttttcaaattgaaattttagaacttaaacataattataattaatatcaatagaa |
298 |
Q |
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| T |
4240693 |
gccttttaccgtcatgctacaacattgtttaattcttcttcttattttttcaaatttaaattttagaacttaaacataattataattaatatcaatatat |
4240594 |
T |
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| Q |
299 |
ttttcaccttcacatatcacatgagtgataacctctactgcatcaattatgttaactacaacatttattat |
369 |
Q |
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| T |
4240593 |
ttttcacattcacatatcacatgagtgataatctctactgcatcaattatgttaagcacaacatttattat |
4240523 |
T |
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