View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_4 (Length: 370)
Name: NF10546_low_4
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 30259744 - 30259955
Alignment:
| Q |
29 |
ttggcatttggcatgactaatagtaaggtaatatgaaattaaaagcatattaatggatcaacaacttgctcaaatgtttaatggtatccaaagccatcta |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30259744 |
ttggcatttggcatgactaatagtaaggtaatatgaaattaaaagcatattaatggatcaacaacttgctcaagtgtttaatggtatccaaagccatcta |
30259843 |
T |
|
| Q |
129 |
gatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcctattttttatgacaatcctaaaacttcatttggcttcattctagatga |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
30259844 |
gatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcatatttctgatgacaatcctaaaacttcatttggcttcatattagatga |
30259943 |
T |
|
| Q |
229 |
ctcgttttttct |
240 |
Q |
| |
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|||||||||||| |
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| T |
30259944 |
ctcgttttttct |
30259955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 29448863 - 29448641
Alignment:
| Q |
18 |
aaccacgtggattggcatttggcatgactaatagtaaggtaatatgaaattaaaagcatattaatggatcaacaacttgctcaaatgtttaatggtatcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29448863 |
aaccacgtggattggcatttggcatgactaatagtaaggtaatatgaaattaaaatcatattaatggatcaacaacttgctcaagtgtttaatggtatcc |
29448764 |
T |
|
| Q |
118 |
aaagccatctagatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcctattttttatgacaatcctaaaacttcatttggcttc |
217 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
29448763 |
aaagtcatctagatcaaatttcatatcacagacactaatgtgcatatataacaaaaatattcatatttctgatgacaatcctaaaacttcatttggcttc |
29448664 |
T |
|
| Q |
218 |
attctagatgactcgttttttct |
240 |
Q |
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|| ||||||||||||||||||| |
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| T |
29448663 |
atattagatgactcgttttttct |
29448641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 26706665 - 26706593
Alignment:
| Q |
249 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgttagtt |
321 |
Q |
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| T |
26706665 |
cccaccctccagaggagctccttcctttgctgcagtcggatgaattaggaacgctctttttgaggcgttagtt |
26706593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 40736608 - 40736526
Alignment:
| Q |
249 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgttagtttattgtttct |
331 |
Q |
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| T |
40736608 |
cccaccctccagatgggctccttcctttgctgcagtcggatgaattaggaacgatctttttgaggcgttagttttttttttct |
40736526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 9452406 - 9452479
Alignment:
| Q |
249 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgttagttt |
322 |
Q |
| |
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| T |
9452406 |
cccaccctccagaggggttcattcctttgctgcaatcggatgaattaggaacgctctttttgaggcgttagttt |
9452479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 47158773 - 47158701
Alignment:
| Q |
249 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgttagtt |
321 |
Q |
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|||||||||| || || ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47158773 |
cccaccctccagacggactcctccctttgctgcagtcggatgaattaggaacgctctttttgaggcgttagtt |
47158701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 6180433 - 6180505
Alignment:
| Q |
250 |
ccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgttagttt |
322 |
Q |
| |
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||||||||| || || ||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
6180433 |
ccaccctccagacggactcctccctttgctgcagtcagatgaattaggaacgctctttttgaggcgttagttt |
6180505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 34249663 - 34249732
Alignment:
| Q |
249 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgtta |
318 |
Q |
| |
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|||||||||| || |||||||||||| |||||||| |||||||| ||||||| |||||||||| ||||| |
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| T |
34249663 |
cccaccctccagacgggctccttcctttgctgcagtcggatgaactaggaacattctttttgagacgtta |
34249732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 322
Target Start/End: Complemental strand, 7585589 - 7585516
Alignment:
| Q |
249 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgctctttttgaggcgttagttt |
322 |
Q |
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|||||||||| || |||||| ||| || ||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
7585589 |
cccaccctccagacgggctctaccctttgttgcagtcggatgaattaggaacgctctttttgaggtgttagttt |
7585516 |
T |
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