View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10546_low_6 (Length: 349)

Name: NF10546_low_6
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10546_low_6
NF10546_low_6
[»] chr7 (2 HSPs)
chr7 (12-231)||(47895126-47895345)
chr7 (263-333)||(47895024-47895094)
[»] chr1 (4 HSPs)
chr1 (12-231)||(31214201-31214420)
chr1 (12-231)||(31219956-31220175)
chr1 (263-333)||(31214453-31214523)
chr1 (263-333)||(31220208-31220278)
[»] chr2 (1 HSPs)
chr2 (86-190)||(22984910-22985013)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 47895345 - 47895126
Alignment:
Q  12 agagagacaaccggaaacataaactttatagtatttcgaaattcaagtgaaatcaatatatgacaagcaaagccaaagattatatcttacgttggatttc 111  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47895345 agagagacaaccggaaacatgaactttatagtagttcgaaattcaagtgaaatcaatatatgacgagcaaagccaaagattatatcttacgttggatttc 47895246  T
Q  112 ctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattcttgatcatcttattcatcaaactacta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47895245 ctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattcttgatcatcttattcatcaaactacta 47895146  T
Q  212 taatgtgtatcatagctgtg 231  Q
    ||||||||||||||||||||    
T  47895145 taatgtgtatcatagctgtg 47895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 47895094 - 47895024
Alignment:
Q  263 ttaatagtagacagaataaaactaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaac 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47895094 ttaatagtagacagaataaaactaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaac 47895024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 31214201 - 31214420
Alignment:
Q  12 agagagacaaccggaaacataaactttatagtatttcgaaattcaagtgaaatcaatatatgacaagcaaagccaaagattatatcttacgttggatttc 111  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31214201 agagagacaaccggaaacatgaactttatattagttcgaaattcaagtgaaatcaatatatgacaagcaaagccaaagattatatcttacgttggatttc 31214300  T
Q  112 ctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattcttgatcatcttattcatcaaactacta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31214301 ctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattcttgatcatcttattcatcaaactacta 31214400  T
Q  212 taatgtgtatcatagctgtg 231  Q
    ||||||||||||||| ||||    
T  31214401 taatgtgtatcatagttgtg 31214420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 31219956 - 31220175
Alignment:
Q  12 agagagacaaccggaaacataaactttatagtatttcgaaattcaagtgaaatcaatatatgacaagcaaagccaaagattatatcttacgttggatttc 111  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219956 agagagacaaccggaaacatgaactttatattagttcgaaattcaagtgaaatcaatatatgacaagcaaagccaaagattatatcttacgttggatttc 31220055  T
Q  112 ctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattcttgatcatcttattcatcaaactacta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31220056 ctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattcttgatcatcttattcatcaaactacta 31220155  T
Q  212 taatgtgtatcatagctgtg 231  Q
    ||||||||||||||| ||||    
T  31220156 taatgtgtatcatagttgtg 31220175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 31214453 - 31214523
Alignment:
Q  263 ttaatagtagacagaataaaactaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaac 333  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31214453 ttaatagtagaaagaataaaactaatattgtcattatatatagaaaagaaatgtctaacaaacctattaac 31214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 31220208 - 31220278
Alignment:
Q  263 ttaatagtagacagaataaaactaatcttgtcattatatatagaaaagaaatgtctaacaaacctattaac 333  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31220208 ttaatagtagaaagaataaaactaatattgtcattatatatagaaaagaaatgtctaacaaacctattaac 31220278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 22984910 - 22985013
Alignment:
Q  86 aaagattatatcttacgttggatttcctggggaagaatgttcgatggaaatatcaaaagctcagccccatttaaatttccttttagagccatatcattct 185  Q
    |||||||||||||||| |||||||||||| || |  ||||| |||||||| ||   |||||||||| |||  ||||||  ||||||||||| ||||||||    
T  22984910 aaagattatatcttacattggatttcctgaggcaagatgttagatggaaa-attgcaagctcagcctcatccaaatttgtttttagagccaaatcattct 22985008  T
Q  186 tgatc 190  Q
    |||||    
T  22985009 tgatc 22985013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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