View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_7 (Length: 322)
Name: NF10546_low_7
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 23887211 - 23887060
Alignment:
| Q |
18 |
catcaaagcccaaccaaaccactccacaatctccccaaaataattaggacaactcacaacctcaaacaaccctcctttaggaattaaatatcctttccct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23887211 |
catcaaagcccaaccaaaccactccacaatctccccaaaataattaggacaactcacaacctcaaacaaccctcctttaggaattaaatatcctttccct |
23887112 |
T |
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| Q |
118 |
tcacttttaagtctcaacaattccttatccgacaaaacattaatcatcatcc |
169 |
Q |
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| T |
23887111 |
tcacttttaagtctcaacaattccttatccgacaaaacattaatcatcatcc |
23887060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 23886997 - 23886924
Alignment:
| Q |
232 |
tctttgtagtgagaaacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagctataacagctat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886997 |
tctttgtagtgagaaacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagctataacagctat |
23886924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 24345702 - 24345853
Alignment:
| Q |
18 |
catcaaagcccaaccaaaccactccacaatctccccaaaataattaggacaactcacaacctcaaacaaccctcctttaggaattaaatatcctttccct |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| || || | ||| ||||||||| |
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| T |
24345702 |
catcaaagcccaaccaaaccactccacaatctccccaaagtaattaggacaactcacaaactcaaataaccctcctttgggtatcacataccctttccct |
24345801 |
T |
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| Q |
118 |
tcacttttaagtctcaacaattccttatccgacaaaacattaatcatcatcc |
169 |
Q |
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|||| |||||| |||||||||||| |||||||| |||||||||||||||||| |
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| T |
24345802 |
tcacctttaagcctcaacaattccgtatccgaccaaacattaatcatcatcc |
24345853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 24345928 - 24345998
Alignment:
| Q |
232 |
tctttgtagtgagaaacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagctataacagc |
302 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24345928 |
tctttgtagtgagagacccatctagcttgaacaaaagaattcaacaaattgaacaaaaaagccataacagc |
24345998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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