View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10546_low_8 (Length: 318)

Name: NF10546_low_8
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10546_low_8
NF10546_low_8
[»] chr5 (12 HSPs)
chr5 (11-318)||(10551370-10551677)
chr5 (159-247)||(7193723-7193811)
chr5 (161-235)||(10651619-10651693)
chr5 (162-247)||(10659490-10659575)
chr5 (165-234)||(10587895-10587964)
chr5 (178-247)||(10612446-10612515)
chr5 (171-237)||(10746446-10746512)
chr5 (39-104)||(10582702-10582767)
chr5 (178-238)||(10605488-10605548)
chr5 (178-238)||(10739839-10739899)
chr5 (178-238)||(10762254-10762314)
chr5 (178-238)||(10581731-10581791)
[»] chr3 (1 HSPs)
chr3 (157-284)||(31466525-31466652)
[»] chr8 (1 HSPs)
chr8 (157-284)||(30363927-30364054)
[»] chr6 (5 HSPs)
chr6 (178-247)||(12900288-12900357)
chr6 (178-247)||(12932994-12933063)
chr6 (161-247)||(12958776-12958862)
chr6 (179-247)||(12907906-12907974)
chr6 (187-247)||(12949343-12949403)
[»] chr2 (1 HSPs)
chr2 (161-247)||(17922822-17922908)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 10551370 - 10551677
Alignment:
Q  11 cacagataaattgtttaaagatgatcataatctccataattatgtgaaactttcaattccagacaaccttttccacattgtggatcgatctattatcatc 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10551370 cacagatgaattgtttaaagatgatcataatctccataattatgtgaaactttcaattccagacaaccttttccatattgtggatcgatctattatcatc 10551469  T
Q  111 gaatcagaacacaatactggcaatggtaatactggcagtatacatcctaatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcag 210  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10551470 gaatcagaacacaatactgacaatggtaatactggcagtatacatcctaatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcag 10551569  T
Q  211 tggaatcaccaaaagaaagaatgaatatggttgatgtaataagggagctcaatatcataaaaagtttctttcctgccgaggttcaacaaaggcgaggtgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10551570 tggaatcaccaaaagaaagaatgaatatggttgatgtaataagggagctcaatatcataaaaagtttctttcctgccgaggttcaacaaaggcgaggtgc 10551669  T
Q  311 atcacagc 318  Q
    ||||||||    
T  10551670 atcacagc 10551677  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 247
Target Start/End: Original strand, 7193723 - 7193811
Alignment:
Q  159 aatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||||||| ||  || |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||    
T  7193723 aatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgt 7193811  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 10651693 - 10651619
Alignment:
Q  161 tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaa 235  Q
    ||||||||| |||||| |||||||| | ||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  10651693 tgtagagaagtgtttagtttcacttttcaggattggacttgcttgttcagtgaaatcaccaaaagaaagaatgaa 10651619  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 10659575 - 10659490
Alignment:
Q  162 gtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    |||||||| || ||| |||||||| || |||||| |||| | ||||||||| ||||||||||||||||||||||||| ||||||||    
T  10659575 gtagagaagtgcttagtttcactttttcggattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgt 10659490  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 10587964 - 10587895
Alignment:
Q  165 gagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatga 234  Q
    ||||| || ||| |||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||    
T  10587964 gagaagtgcttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaaagaaagaatga 10587895  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 10612446 - 10612515
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    |||||||| ||||||||| ||||  ||||||| |||||||||| ||||||||||||||||| || |||||    
T  10612446 tttcactttttaggattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgt 10612515  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 10746512 - 10746446
Alignment:
Q  171 tgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaata 237  Q
    |||||| |||||||| ||||||||| ||||  |||| || | |||||||||||||||||||||||||    
T  10746512 tgtttagtttcactttttaggattggacttatttgtacaattgaatcaccaaaagaaagaatgaata 10746446  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 10582702 - 10582767
Alignment:
Q  39 aatctccataattatgtgaaactttcaattccagacaaccttttccacattgtggatcgatctatt 104  Q
    ||||||||||||| |||||||||||||||| || | ||||||||||| ||| | ||||| ||||||    
T  10582702 aatctccataattttgtgaaactttcaatttcaaataaccttttccatattttcgatcggtctatt 10582767  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 10605488 - 10605548
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatat 238  Q
    |||||||| |||| |||| ||||  ||||||| |||||||||| |||||||||||||||||    
T  10605488 tttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatat 10605548  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 10739899 - 10739839
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatat 238  Q
    |||||||| |||| |||| ||||  ||||||| |||||||||| |||||||||||||||||    
T  10739899 tttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatat 10739839  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 10762314 - 10762254
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatat 238  Q
    |||||||| |||| |||| ||||  ||||||| |||||||||| |||||||||||||||||    
T  10762314 tttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatat 10762254  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 10581731 - 10581791
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatat 238  Q
    |||||||| ||||||||| ||||   |||||| |||| ||||||||||||||| |||||||    
T  10581731 tttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaagactgaatat 10581791  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 31466652 - 31466525
Alignment:
Q  157 ctaatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgtaataaggga 256  Q
    |||||||||||||||||||| |||||||| |||| |||||||||  ||||||| ||||||||||||||||||| |||| ||||||||| || || || ||    
T  31466652 ctaatgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagaga 31466553  T
Q  257 gctcaatatcataaaaagtttctttcct 284  Q
    ||| ||||| || |||||||||||||||    
T  31466552 gcttaatataattaaaagtttctttcct 31466525  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 30363927 - 30364054
Alignment:
Q  157 ctaatgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgtaataaggga 256  Q
    ||||||| ||||||||| ||||||||||| |  | ||||||||| | ||||||  ||||||||| ||||||||||||| ||||||||| || ||||| ||    
T  30363927 ctaatgtcgagaaatgtctactttcacttttctgtattgcacttgcatgttcaacggaatcaccgaaagaaagaatgagtatggttgaagtcataagaga 30364026  T
Q  257 gctcaatatcataaaaagtttctttcct 284  Q
    ||| ||||| || |||||||||||||||    
T  30364027 gcttaatataatcaaaagtttctttcct 30364054  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 12900288 - 12900357
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||| || |||||    
T  12900288 tttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgt 12900357  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 12932994 - 12933063
Alignment:
Q  178 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||| || |||||    
T  12932994 tttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgt 12933063  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 12958776 - 12958862
Alignment:
Q  161 tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||| | || ||| |||||||| ||||||||| |||||  |||||| |||||||||||||||||||||||||||| || |||||    
T  12958776 tgtagaggagtgcttagtttcactttttaggattggacttttatgttcattggaatcaccaaaagaaagaatgaatattgtcgatgt 12958862  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 12907906 - 12907974
Alignment:
Q  179 ttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||| ||||||||| |||||  |||||| |||||||| ||||||||||||||||||| || |||||    
T  12907906 ttcactttttaggattggacttttatgttcattggaatcaacaaaagaaagaatgaatattgtagatgt 12907974  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 12949343 - 12949403
Alignment:
Q  187 ttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||||| ||||| ||||||| |||||||| |||| |||||||||||||| || |||||    
T  12949343 ttaggattggacttttttgttcattggaatcatcaaatgaaagaatgaatattgtggatgt 12949403  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 17922908 - 17922822
Alignment:
Q  161 tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt 247  Q
    ||||||| | || ||| |||| ||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||| || |||||    
T  17922908 tgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgt 17922822  T

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