View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10546_low_9 (Length: 304)
Name: NF10546_low_9
Description: NF10546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10546_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 33592019 - 33591740
Alignment:
| Q |
16 |
tatatacacctcctctgcagttaattttatannnnnnnnnn-gtctttatgttccttacattttgtccatgaattatatgtatatgcactagaaaattag |
114 |
Q |
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| T |
33592019 |
tatatacacctcctctgcagttaattttatattttttttcttgtctttatgttccttacattttgtccatgaattatatgtatatgtactagaaaattag |
33591920 |
T |
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| Q |
115 |
cagttagttnnnnnnnttagtttgttgtccaaagattatatttttcagttctccactttgtttagtctgacacatggctgaataaatcgtttgagagaat |
214 |
Q |
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| T |
33591919 |
cagttagttaaaaaatttagtttgctgtccaaggattatatgtttcagttctccactttgtttagt------tatggttgaataaattgttttggagaac |
33591826 |
T |
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| Q |
215 |
cctagttcaattcatagtggaaataatttttggtgagacttacttacctaccaaccaaactttagattaatagggttcttctctct |
300 |
Q |
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||| |||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33591825 |
cctggttcaattcatagtaaaaacaatttttggtgagaattacttacctaccaagcaaactttagattaatagggttcttatctct |
33591740 |
T |
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