View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10547_high_10 (Length: 209)

Name: NF10547_high_10
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10547_high_10
NF10547_high_10
[»] chr5 (2 HSPs)
chr5 (2-150)||(4554804-4554952)
chr5 (176-209)||(4555098-4555131)
[»] chr2 (1 HSPs)
chr2 (20-140)||(41519719-41519841)
[»] chr4 (2 HSPs)
chr4 (18-63)||(6247326-6247371)
chr4 (180-209)||(6247126-6247155)
[»] chr1 (3 HSPs)
chr1 (52-152)||(4640697-4640798)
chr1 (176-209)||(11469422-11469455)
chr1 (18-63)||(11469621-11469666)
[»] chr8 (2 HSPs)
chr8 (18-63)||(12350114-12350159)
chr8 (176-209)||(12350324-12350357)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 4554804 - 4554952
Alignment:
Q  2 tgctgcttcaagtctctttcttcctctcattcaaaccttatcagcccaggaaaattgattttccaaaaccattcccttgtcatcgtcagttcaacttcaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4554804 tgctgcttcaagtctctttcttcctctcattcaaaccttatcagcccaggaaaattgattttccaaaaccattcccttgtcaccgtcagttcaacttcaa 4554903  T
Q  102 tggcaaaatttcactattaaaatgaagaaccgtgtatgaggtagtagat 150  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  4554904 tagcaaaatttcactattaaaatgaagaaccgtgtatgaggtagtagat 4554952  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 4555098 - 4555131
Alignment:
Q  176 attcatacaaaaattccattgagtttgttgcttc 209  Q
    ||||||||||||||||||||||||||||||||||    
T  4555098 attcatacaaaaattccattgagtttgttgcttc 4555131  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 41519841 - 41519719
Alignment:
Q  20 tcttcctctcattcaaaccttatcagcccaggaaaattgattttccaaaa--ccattcccttgtcatcgtcagttcaacttcaatggcaaaatttcacta 117  Q
    |||||||||| |||||||||| ||||| ||| ||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||| |    
T  41519841 tcttcctctccttcaaaccttgtcagcacagaaaaattgattttccaaaaaaccattcccttgtcaccgtcagttcaatttcaatggcaaaatttcacaa 41519742  T
Q  118 ttaaaatgaagaaccgtgtatga 140  Q
    ||||||||||||||| |||||||    
T  41519741 ttaaaatgaagaaccatgtatga 41519719  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 6247371 - 6247326
Alignment:
Q  18 tttcttcctctcattcaaaccttatcagcccaggaaaattgatttt 63  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  6247371 tttcttcctctcattcaaaccttatcagctcaggaaaattgatttt 6247326  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 209
Target Start/End: Complemental strand, 6247155 - 6247126
Alignment:
Q  180 atacaaaaattccattgagtttgttgcttc 209  Q
    ||||||||||||||||||||||||||||||    
T  6247155 atacaaaaattccattgagtttgttgcttc 6247126  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 4640697 - 4640798
Alignment:
Q  52 aaaattgattttccaaaa-ccattcccttgtcatcgtcagttcaacttcaatggcaaaatttcactattaaaatgaagaaccgtgtatgaggtagtagat 150  Q
    |||||||||||||||||| ||||| |||| |||  |||| |  || ||||||| ||||||||||| |||||||  ||||||| |||||||||||||| ||    
T  4640697 aaaattgattttccaaaatccattgccttatcactgtcattgaaatttcaatgacaaaatttcacaattaaaacaaagaaccatgtatgaggtagtaaat 4640796  T
Q  151 cc 152  Q
    ||    
T  4640797 cc 4640798  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 11469455 - 11469422
Alignment:
Q  176 attcatacaaaaattccattgagtttgttgcttc 209  Q
    ||||||||||||||||||||||||||||||||||    
T  11469455 attcatacaaaaattccattgagtttgttgcttc 11469422  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 11469666 - 11469621
Alignment:
Q  18 tttcttcctctcattcaaaccttatcagcccaggaaaattgatttt 63  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||    
T  11469666 tttcttcctctcattcaaaccttattagcttaggaaaattgatttt 11469621  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12350114 - 12350159
Alignment:
Q  18 tttcttcctctcattcaaaccttatcagcccaggaaaattgatttt 63  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||    
T  12350114 tttcttcctctcattcaaaccttataagcttaggaaaattgatttt 12350159  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 12350324 - 12350357
Alignment:
Q  176 attcatacaaaaattccattgagtttgttgcttc 209  Q
    ||||||||||||||||||||||||||||||||||    
T  12350324 attcatacaaaaattccattgagtttgttgcttc 12350357  T

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