View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10547_high_2 (Length: 311)

Name: NF10547_high_2
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10547_high_2
NF10547_high_2
[»] chr5 (1 HSPs)
chr5 (1-289)||(43533483-43533777)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 43533777 - 43533483
Alignment:
Q  1 ggcagcagatccagcagcacggaggggaaggagtttggcggaagtgaaaagaggaggggaagcaatccatctggcaatggaatttccaatgtcgacgctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  43533777 ggcagcagatccagcagcacggaggggaaggagtttggcggaagtgaaaagaggagtggaagcaatccatctggcaatggaatttccaatgtcgacactg 43533678  T
Q  101 ggaccctcaggacccaaggaattaccagtacctaaagtaatagaagctgcaatagcctttaagaaagggttggaattggaatt------ggaaagaaggt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||      |||||||||||    
T  43533677 ggaccctcaggacccaaggaattaccagtacctaaagtaatagaagctgcaatagcctttaagaaagggcgggaattggaattggaattggaaagaaggt 43533578  T
Q  195 tgagaagagaaacaagaagacctccaaaagcgggaacaagtattacacttttccatgtttcttgaataggagcttctctcaaccatgaggcacct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43533577 tgagaagagaaacaagaagacctccaaaagcgggaacaagtattacacttttccatgtttcttgaataggagcttctctcaaccatgaggcacct 43533483  T

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