View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10547_low_1 (Length: 412)
Name: NF10547_low_1
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10547_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 46629362 - 46629751
Alignment:
| Q |
18 |
acttcatatgtatattccaatggtaattacaatggagtagctgattgaattatcatttgattgtaacat--------tatttgaacatttatgcccgtat |
109 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46629362 |
acttcatatgtatattccaatggtaattataatggagtagctgattgaattatcatttgattgtaacatacaacatttatttgaacatttatgcccgtat |
46629461 |
T |
|
| Q |
110 |
cagtgccttttttctttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629462 |
cagtgccttttttctttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttc |
46629561 |
T |
|
| Q |
210 |
tctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactaggctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629562 |
tctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactaggctt |
46629661 |
T |
|
| Q |
310 |
ggtgtcgaacctgggaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatct |
399 |
Q |
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| T |
46629662 |
ggtgtcgaacctgggaagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatatattacaatct |
46629751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 126 - 379
Target Start/End: Original strand, 46637303 - 46637553
Alignment:
| Q |
126 |
tatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacata |
225 |
Q |
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||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| | |||||| |
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| T |
46637303 |
tatatatataatttgtttcagtcctcactttgcttatattt---atacacagatttcaaagtcgtttatggagggcggaacttctctagaagattacata |
46637399 |
T |
|
| Q |
226 |
tcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactaggcttggtgtcgaacctggga |
325 |
Q |
| |
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|||| ||||||||||||||||||| | ||| ||||||||||| ||||| |||||||| ||||||||||||| ||||||||||| | |||||||||| |
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| T |
46637400 |
tcttttttgaagtctactgttggacttggcgtacttgtggaagctgtaggtattggtaaggagaagggagacctcactaggcttggcatggaacctggga |
46637499 |
T |
|
| Q |
326 |
agaacagtcgga-cgttttcagcaccaacttgcaaatctttgtcttctcttggac |
379 |
Q |
| |
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|| || || | | ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
46637500 |
aggac-gttgaagcgtttccagcaccagcttgcaaatctttgtcttctcttggac |
46637553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 125 - 386
Target Start/End: Original strand, 46618596 - 46618854
Alignment:
| Q |
125 |
ttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacat |
224 |
Q |
| |
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||||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||| | |||| |
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| T |
46618596 |
ttatatatatcatatgtttcagtcctcactttacttatattt---atacacagatttcaaagtcgtttatggagggaagaacttctctagaagattacac |
46618692 |
T |
|
| Q |
225 |
atcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactaggcttggtgtcgaacctggg |
324 |
Q |
| |
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||||||||||||||||||||||||| | || ||||||||||| ||||| |||||||| ||| |||||||||||||||| |||| | ||||||||| |
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| T |
46618693 |
atcttctttgaagtctactgttggacttggtgtacttgtggaagctgtaggtattggtaaggagatgggagaccttactaggattggcatggaacctggg |
46618792 |
T |
|
| Q |
325 |
aagaacagtcggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtga |
386 |
Q |
| |
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||| || || |||| ||| |||| |||||||| ||||||||||||||||||| ||||| |
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| T |
46618793 |
aaggacgttcaagcgttgccagtaccagcttgcaaagctttgtcttctcttggacctagtga |
46618854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 196 - 390
Target Start/End: Complemental strand, 46643439 - 46643242
Alignment:
| Q |
196 |
gagggcagaatttctctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggag |
295 |
Q |
| |
|
||||| |||| |||||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||| | |||||||| ||||||||| |
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| T |
46643439 |
gagggaagaacttctctagaagaatacatatcttatttgaagtctactgctggacttggcgttcttgtggaagcagttagtattggtaaggagaagggag |
46643340 |
T |
|
| Q |
296 |
accttactaggcttggtgtcgaacctgggaagaacagtc---ggacgttttcagcaccaacttgcaaatctttgtcttctcttggaccgagtgatata |
390 |
Q |
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||||||||||||||| || |||||| |||||||||||| || | |||||||||| |||||||||| || |||||||| ||||||| ||||||||| |
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| T |
46643339 |
accttactaggcttgacgtggaacctaggaagaacagtcctggggcattttcagcacaaacttgcaaagctctgtcttcttttggacctagtgatata |
46643242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 46176773 - 46176604
Alignment:
| Q |
134 |
tcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttcttt |
233 |
Q |
| |
|
||||||| ||| |||||||||||| ||||| | |||||| ||| | || ||||| ||| |||||| ||||| |||||| ||| |||||||||||||||| |
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| T |
46176773 |
tcatttgcttcagtcctcactttg--tgtatat-ttatactcaggtgtctaagtcatttgtggaggacagaacttctcttgaagaatacatatcttcttt |
46176677 |
T |
|
| Q |
234 |
gaagtctactgttggaataaacgttcttgtggaagcagtagggattggtaacaagaagggagaccttactagg |
306 |
Q |
| |
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|||||||| ||||||| | || ||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
46176676 |
gaagtctattgttggacttggtgtccttgtggaagcagtaggtattggtaaggagaagaaagaccttactagg |
46176604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 46176602 - 46176566
Alignment:
| Q |
363 |
tttgtcttctcttggaccgagtgatatattacaatct |
399 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| |
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| T |
46176602 |
tttgtcttctcttggaccgagtgaaataatacaatct |
46176566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 168 - 399
Target Start/End: Complemental strand, 15769882 - 15769648
Alignment:
| Q |
168 |
ttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttctttgaagtctactgttggaataaacgttcttgtggaa |
267 |
Q |
| |
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|||||| ||| |||| ||||| | | ||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
15769882 |
ttatactcaggtttctaagtcatatgtggagggaagaacttctctagaagaatacatatcttctttgaagtctattgttggagttggtgttcttgtggaa |
15769783 |
T |
|
| Q |
268 |
gcagtagggattggtaacaagaagggagaccttactaggcttggtgtcgaacctgggaagaacagtcg---gacgttttcagcaccaacttgcaaatctt |
364 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||| |||||||||||||||| ||| |
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| T |
15769782 |
gcagtaggtattggtaaggagaagggagaccttactaggcttggtgtcgagcctgtgaagaacagtcgtaaggcgtttttagcaccaacttgcaaagctt |
15769683 |
T |
|
| Q |
365 |
tgtcttctcttggaccgagtgatatattacaatct |
399 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |
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|
| T |
15769682 |
tgtcttctcttggacttagtgatataatacaatct |
15769648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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