View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10547_low_18 (Length: 239)
Name: NF10547_low_18
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10547_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34477739 - 34477965
Alignment:
| Q |
1 |
aaaataaagatagtgggaaacaatt----tataaag-acacagataatttataaagatgaaacaagaaatagaaaacaaagacgtgttaatcacaaaaac |
95 |
Q |
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|
||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34477739 |
aaaataaagatagtgggaaacaattaatttataaattacatagataatttataaagatgaaacaagaaatagaaaacaaagacgtgttaatcacaaaaac |
34477838 |
T |
|
| Q |
96 |
ataaagaaggcaacaagtgtacttgctgaagatcaaatacaccactaaccttcaagtaaaaaattatacacctaacaagaaagtacaaattttcatttgg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |
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| T |
34477839 |
ataaagaaggcaacaagtgtacttgctgaagatcaaatacaccactaaccttcaagtcaaaaattatacacccaacaagaaagtataaattttcatttgg |
34477938 |
T |
|
| Q |
196 |
gtatcgacgagttttatggaggccttt |
222 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
34477939 |
gtatcgacgagttttatggaggccttt |
34477965 |
T |
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