View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10547_low_2 (Length: 400)

Name: NF10547_low_2
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10547_low_2
NF10547_low_2
[»] chr2 (1 HSPs)
chr2 (18-385)||(2433440-2433808)
[»] chr6 (1 HSPs)
chr6 (18-384)||(12438179-12438546)
[»] chr5 (3 HSPs)
chr5 (64-383)||(41654551-41654871)
chr5 (18-383)||(41646973-41647336)
chr5 (18-338)||(41620697-41621015)
[»] chr1 (2 HSPs)
chr1 (231-285)||(12636975-12637029)
chr1 (130-285)||(12609879-12610035)
[»] chr3 (4 HSPs)
chr3 (231-285)||(23145894-23145948)
chr3 (178-271)||(22986265-22986359)
chr3 (231-285)||(23036144-23036198)
chr3 (233-285)||(23039015-23039067)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 2433440 - 2433808
Alignment:
Q  18 taaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2433440 taaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatggatacacaataccatctggaaca 2433539  T
Q  118 caagtgtttgtgaatggatgggcaataggaagagaccaaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433540 caagtgtttgtgaatggatgggcaataggaagagaccaaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgatt 2433639  T
Q  218 acaaagggtctaa-tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctca 316  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433640 acaaagggtctaattttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctca 2433739  T
Q  317 attgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaagt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433740 attgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaagt 2433808  T

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Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 12438546 - 12438179
Alignment:
Q  18 taaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaaca 117  Q
    |||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||| ||||| | |||| ||||||| |||| || | ||||||    
T  12438546 taaagaaaccttaagattgcaccctcctggtcctctactaattccaagagagtgtattgaaaattgtgtggttaacggatacataataccagccggaaca 12438447  T
Q  118 caagtgtttgtgaatggatgggcaataggaagagaccaaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgatt 217  Q
    |||||| ||||||||| ||||||||| |||||||||| |||||||||||  ||||||||||||||| |||||||||| || || ||||||| | ||||||    
T  12438446 caagtgcttgtgaatgcatgggcaattggaagagacccaaagtattggaatgaaggagaaaagtttaatcctgagagatttattgattgtccaattgatt 12438347  T
Q  218 acaaagggtctaattt-gagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctca 316  Q
    |||||||||||||||| ||||  |||||||||||||| ||||| ||||| ||||| || |||   || || |||  |  | | ||||||||||| |||||    
T  12438346 acaaagggtctaatttcgagtttataccttttggtgctggaagaagaatgtgtcccggcatcttgttcgccgaagttggtatggaatttcctctggctca 12438247  T
Q  317 attgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaag 384  Q
     ||||||||||||||||||||||||||||||| ||||| || |||||||||||| || ||||||||||    
T  12438246 gttgttgtactattttgattggggacttccctctggaactagtcatgaaaatttagacatgactgaag 12438179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 64 - 383
Target Start/End: Original strand, 41654551 - 41654871
Alignment:
Q  64 agagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaacacaagtgtttgtgaatggatgggcaataggaagagaccaaaagtatt 163  Q
    |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  41654551 agagagtgtattgaaacttgtgagataaatggatacacaataccagctggaacacaagtgtttgtgaatgcatgggcaattggaagagaccaaaagtatt 41654650  T
Q  164 ggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgattacaaagggtctaa-tttgagtacataccttttggtgcaggaaggag 262  Q
    |||  |||||||||||||||||||| ||||||||| |||||| |  | |||||| || ||||||||| ||||||| |||||||||||||||||||| |||    
T  41654651 ggattgaaggagaaaagttttatccagagaggttcttggattcttcaattgatttcagagggtctaattttgagttcataccttttggtgcaggaaagag 41654750  T
Q  263 aatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattgttgtactattttgattggggacttccctatggaattactcat 362  Q
    ||| ||||| |||||| | ||||||| | ||| | ||||| |||||||||| || ||| |||| | ||||||||||  ||| |||| |||||  ||||||    
T  41654751 aatgtgtcctggaatctcttttgctgcatctagtatagaacttcctcttgcacagttgctgtattcttttgattggaaactcccctctggaaccactcat 41654850  T
Q  363 gaaaatttggatatgactgaa 383  Q
    |||||||| || |||||||||    
T  41654851 gaaaattttgacatgactgaa 41654871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 41646973 - 41647336
Alignment:
Q  18 taaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaaca 117  Q
    ||||||||||||||||||||||||  ||| |||| | ||  | || |||||||||||||||||||||||||| ||||||||||||||| || ||||||||    
T  41646973 taaagaaaccttaagattgcacccttctaatcctat-ct--ttcctagagagtgtattgaaacttgtgagataaatggatacacaataccagctggaaca 41647069  T
Q  118 caagtgtttgtgaatggatgggcaataggaagagaccaaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgatt 217  Q
    |||||||||||||||  ||||||||| ||||||||| |||| |||||||  |||||||||||||||||||| ||||||||| |||||| || | || |||    
T  41647070 caagtgtttgtgaattcatgggcaattggaagagacgaaaaatattggattgaaggagaaaagttttatccagagaggttcttggattctccaattaatt 41647169  T
Q  218 acaaagggtctaa-tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctca 316  Q
     || ||||||||| ||||||| |||||||||||||||||||| |||||| ||||| |||||| | ||||||| | ||| | ||||| |||||||||| ||    
T  41647170 tcagagggtctaattttgagttcataccttttggtgcaggaaagagaatgtgtcctggaatctcttttgctgcatctagtatagaacttcctcttgcaca 41647269  T
Q  317 attgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaa 383  Q
     ||| |||| | ||||||||||  ||| |||| |||||  |||||||||||||| || |||||||||    
T  41647270 gttgctgtattcttttgattggaaactcccctctggaaccactcatgaaaattttgacatgactgaa 41647336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 41621015 - 41620697
Alignment:
Q  18 taaagaaaccttaagattgcacccacctagtcctctactactaccaagagagtgtattgaaacttgtgagattaatggatacacaatatcatctggaaca 117  Q
    |||||||||||| ||| |||| || |||| |||| |||| |||   |||||||||  ||||||||||||||| ||||||||||||||| |    ||||||    
T  41621015 taaagaaaccttcagactgcatcctcctaatcctttacttcta---agagagtgtgctgaaacttgtgagataaatggatacacaataccgggcggaaca 41620919  T
Q  118 caagtgtttgtgaatggatgggcaataggaagagaccaaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattgtctagttgatt 217  Q
    || ||||| ||||||  ||||||||| | ||||||||||||  ||||||| || ||||| ||||||||||| ||||||||| |||||| || | ||||||    
T  41620918 cacgtgttagtgaatacatgggcaattgcaagagaccaaaaaaattggagtgatggagacaagttttatccagagaggttcttggattctccaattgatt 41620819  T
Q  218 acaaagggtctaa-tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctca 316  Q
    ||||||| || || ||||| | | |||||||||||||||||| |||||| ||||| || ||    ||||||  |||||   ||||| |||||||||| ||    
T  41620818 acaaaggatccaattttgatttcttaccttttggtgcaggaaagagaatgtgtcctggcattttgtttgctacacctaccatagaacttcctcttgcaca 41620719  T
Q  317 attgttgtactattttgattgg 338  Q
     ||||| | |||||||||||||    
T  41620718 gttgttattctattttgattgg 41620697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 12637029 - 12636975
Alignment:
Q  231 tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 285  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||    
T  12637029 tttgagtacattccttttggtgcaggaagaagaatatgcccaggcatcacatttg 12636975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 12610035 - 12609879
Alignment:
Q  130 aatggatgggcaataggaagagaccaaaagtattggagggaaggagaaaagttttatcctgagaggttcatggattg-tctagttgattacaaagggtct 228  Q
    |||| |||||| || |||||||| | |||||| ||||  |||  ||| ||||||||||| ||||| ||||| | | | |||| |||| |||||||||  |    
T  12610035 aatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctcta-ttgactacaaagggaat 12609937  T
Q  229 aattt-gagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 285  Q
    ||||| |||||||| || |||||||| ||||| |||||||||||||| | ||||||||    
T  12609936 aattttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttg 12609879  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 23145948 - 23145894
Alignment:
Q  231 tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 285  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| | ||||||||    
T  23145948 tttgagtacattccttttggtgctggaagaagaatatgtccagggagcacatttg 23145894  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 22986359 - 22986265
Alignment:
Q  178 aagttttatcctgagaggttcatggattgt-ctagttgattacaaagggtctaattt-gagtacataccttttggtgcaggaaggagaatatgtcc 271  Q
    |||||||||||||||||||| || ||| || ||| |||||| ||||||  ||||||| |||||||| || |||||||| ||||||||||| |||||    
T  22986359 aagttttatcctgagaggtttattgatagttcta-ttgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatttgtcc 22986265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 23036198 - 23036144
Alignment:
Q  231 tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 285  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||    
T  23036198 tttgagtacattccttttggtgccggaagaagaatatgcccagggagcacatttg 23036144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 23039067 - 23039015
Alignment:
Q  233 tgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg 285  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||    
T  23039067 tgagtacattccttttggtgccggaagaagaatatgcccagggagcacatttg 23039015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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