View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10547_low_3 (Length: 379)
Name: NF10547_low_3
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10547_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 1481453 - 1481808
Alignment:
| Q |
18 |
ggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgcacgggtcaaatcttagtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481453 |
ggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgcacgggtcaaatcttagtaa |
1481552 |
T |
|
| Q |
118 |
ttaattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcact |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481553 |
ttgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcact |
1481652 |
T |
|
| Q |
218 |
gtaacaagtatagtgagcgcaaccctctttgcatgctgccatgtttatggctacattttcagtagtgatacagaggttgttaaatacattactgtcttgg |
317 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
1481653 |
gaaacaagtatagtgagcgcaaccctctttgcatgctgccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtcttgg |
1481752 |
T |
|
| Q |
318 |
ctcttctggtttctatatctgttatactcgatagcatacaaggcgtcttcacaggt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1481753 |
ctcttctggtttctatatctgttatactcgatagcatacaaggcgttttcacaggt |
1481808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 127 - 363
Target Start/End: Original strand, 49190892 - 49191128
Alignment:
| Q |
127 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgtaacaagt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||| |
|
|
| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagt |
49190991 |
T |
|
| Q |
227 |
atagtgagcgcaaccctctttgcatgctgccatgtttatggctacattttcagtagtgatacagaggttgttaaatacattactgtcttggctcttctgg |
326 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||| |
|
|
| T |
49190992 |
atagtgagcgcaaccctctttgcatgccgccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctcctctgg |
49191091 |
T |
|
| Q |
327 |
tttctatatctgttatactcgatagcatacaaggcgt |
363 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
49191092 |
tttctatatccgttatactcgacagcatacaaggcgt |
49191128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 1850610 - 1850550
Alignment:
| Q |
20 |
atgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgatttt |
80 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1850610 |
atgcatattaagataattttaataataatattgtatacttattaagtttgtttgtgatttt |
1850550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
140 |
gtttcaaatgaattaggagctggtaatcca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University