View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10547_low_4 (Length: 375)
Name: NF10547_low_4
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10547_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 51109082 - 51108729
Alignment:
| Q |
1 |
taaatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51109082 |
taaatgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatg |
51108983 |
T |
|
| Q |
101 |
aacaaagaaaccttaatgcatgaatgttccttagaaacaatctcttttcaacactatcaaaattgtcatctttgctattgggaatatgttccatggtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51108982 |
aacaaagaaaccttaatgcatgaatgttccttagaaac----------caacactatcaaaattgtcatctttgctattgggaatatgttgcatggtgat |
51108893 |
T |
|
| Q |
201 |
tttggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51108892 |
tttggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgt |
51108793 |
T |
|
| Q |
301 |
ttggtagctttgctatgtattggtggtgttggttgatgatgtttttctgtgttttctctttcat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51108792 |
ttggtagctttgctatgtattggtggtgttggttgatgatgtttttctgtgttttctctttcat |
51108729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University