View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10547_low_7 (Length: 316)

Name: NF10547_low_7
Description: NF10547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10547_low_7
NF10547_low_7
[»] chr3 (28 HSPs)
chr3 (51-297)||(10034982-10035228)
chr3 (51-297)||(10520464-10520710)
chr3 (80-297)||(10430914-10431131)
chr3 (51-297)||(9852856-9853102)
chr3 (51-297)||(9841837-9842083)
chr3 (51-297)||(9980445-9980691)
chr3 (69-297)||(10666514-10666742)
chr3 (51-297)||(10263680-10263926)
chr3 (67-297)||(10129901-10130125)
chr3 (65-261)||(10372768-10372965)
chr3 (51-297)||(10583561-10583808)
chr3 (79-254)||(11772256-11772430)
chr3 (79-254)||(11778855-11779029)
chr3 (65-261)||(10360658-10360855)
chr3 (67-297)||(10531760-10531989)
chr3 (69-261)||(10503666-10503857)
chr3 (125-297)||(10091974-10092146)
chr3 (125-297)||(10198856-10199028)
chr3 (124-297)||(10680558-10680731)
chr3 (97-294)||(10086157-10086354)
chr3 (97-294)||(10193077-10193274)
chr3 (14-53)||(9980724-9980763)
chr3 (14-53)||(10035261-10035300)
chr3 (14-53)||(10130173-10130212)
chr3 (14-53)||(10263959-10263998)
chr3 (14-53)||(10430720-10430759)
chr3 (223-297)||(10583492-10583566)
chr3 (134-185)||(11242500-11242551)
[»] scaffold0083 (2 HSPs)
scaffold0083 (51-297)||(54446-54692)
scaffold0083 (14-53)||(54374-54413)
[»] chr4 (1 HSPs)
chr4 (124-297)||(17849840-17850013)
[»] chr2 (1 HSPs)
chr2 (99-297)||(26909867-26910065)
[»] chr8 (2 HSPs)
chr8 (139-294)||(44954592-44954746)
chr8 (211-261)||(11488114-11488164)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 10035228 - 10034982
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||    
T  10035228 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttgga 10035129  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
    |||||||||||||||||||||||||||| |||||||||| ||   |  |||| | |||| | |||||||||||| |||||||||||||||||||||||||    
T  10035128 ccaatgttccttccttttatacctttcttctaacaatgggcaattccaaatgcagagttccctaagagagtcagtgaggctgtcttctggtaatgactca 10035029  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    ||||||| ||| | |||||||  |||| |||||||||||||||||||    
T  10035028 agctttttacaatcccacaatctaagtgatttcagcgaggaagggag 10034982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 10520710 - 10520464
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||  ||||||  ||||||||||||||||||||    
T  10520710 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttggtaatttattgatatgactgggatgtgagcaattttgga 10520611  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
    |||||||||||||||||||||||||||| ||||||||||||||  |  ||||  ||||  ||| |||||||||||||||||||||||||||||||| | |    
T  10520610 ccaatgttccttccttttatacctttcttctaacaatggacattcccaaatgagcagtctcttcagagagtcagggaggctgtcttctggtaatgattta 10520511  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  10520510 agcttttcacatttccacaaatcaagtaatttcagcgaggaagggag 10520464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 80 - 297
Target Start/End: Original strand, 10430914 - 10431131
Alignment:
Q  80 ggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcta 179  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  10430914 ggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttctt 10431013  T
Q  180 ctaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaa 279  Q
    ||||||||||||||  |  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |    
T  10431014 ctaacaatggacattccctaattctcagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccacaaatcaagtga 10431113  T
Q  280 tttcagcgaggaagggag 297  Q
    ||||||||||||||||||    
T  10431114 tttcagcgaggaagggag 10431131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 9853102 - 9852856
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||||| || | ||||| |||||||||||||||||||||    
T  9853102 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtaacctggtcatttatttctatgacagggatgtgagcaattttgga 9853003  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
    |||||||||||||||||||||||||||| |||||||||||||||    ||||  ||||  ||| || ||||||||||||||||||||||||||||||||     
T  9853002 ccaatgttccttccttttatacctttcttctaacaatggacatccataaatgtccagtctcttcagtgagtcagggaggctgtcttctggtaatgactct 9852903  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    |||||||||||||||||||||| |||| |||||||||| || |||||    
T  9852902 agcttttcacatttccacaattcaagtgatttcagcgatgatgggag 9852856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 9842083 - 9841837
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |  || ||  |||||| |||||||||||||||||||||    
T  9842083 ggtaggaactgtggaacatacctgaaacgggaacacaacttgtctatcatattctgacttggtggtttatccatatgacagggatgtgagcaattttgga 9841984  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
     ||||||||||||||||||||||||||| ||||||||||||||| |  ||||  |||  ||| |||||||||||||||||||||||||||||||||||||    
T  9841983 gcaatgttccttccttttatacctttcttctaacaatggacatccccaaatgttcagacgctcaagagagtcagggaggctgtcttctggtaatgactca 9841884  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    |||||||||||||   |||||  |||| |||||||||||||||||||    
T  9841883 agcttttcacattgaaacaatataagtgatttcagcgaggaagggag 9841837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 9980691 - 9980445
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||  |||||| |||||||||||||||||||||    
T  9980691 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttgga 9980592  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
    |||||||||||||||||||||||||||| |||||||||| || |   | ||| |||||| ||||||||| |||||||||||||||||||||||||||||     
T  9980591 ccaatgttccttccttttatacctttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaatgactct 9980492  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    ||||||| ||| |   | |||| |||| |||||||||||||||||||    
T  9980491 agctttttacaatcataaaattcaagtgatttcagcgaggaagggag 9980445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 69 - 297
Target Start/End: Complemental strand, 10666742 - 10666514
Alignment:
Q  69 tacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcctttt 168  Q
    |||||||||  ||||||||||| |||||||||||||||||||  | ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  10666742 tacctgaaacaggaacacaactcgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctttt 10666643  T
Q  169 atacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccac 268  Q
    |||||||||| ||||||||||||||  | |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  10666642 atacctttcttctaacaatggacattcctcaatgtgcagttccttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacattcaaac 10666543  T
Q  269 aattgaagtaatttcagcgaggaagggag 297  Q
    |||| |||| |||||||||||||||||||    
T  10666542 aattcaagtgatttcagcgaggaagggag 10666514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 10263926 - 10263680
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||   |||||||||||||||||||||||||||    
T  10263926 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttgga 10263827  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
    | |||||||||||||||||||||||||| |||||||||| ||   | | || |  ||| | |||||||||  |||||||||||||||||||||||||||     
T  10263826 ctaatgttccttccttttatacctttcttctaacaatgggcaaaactcgatagcgagtagtttaagagaggaagggaggctgtcttctggtaatgactct 10263727  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    ||||||||||||     |||| ||||| |||||||||||||||||||    
T  10263726 agcttttcacatccaagcaatagaagtgatttcagcgaggaagggag 10263680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 10130125 - 10129901
Alignment:
Q  67 catacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcctt 166  Q
    |||||||||||||||||||||||||||||||||||||||| |||      |||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  10130125 catacctgaaatgggaacacaacttgtctatcatattgtgcctt------tgatatttttgaaagggatgtgagcaattttggagcaatgttccttcctt 10130032  T
Q  167 ttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttcc 266  Q
    |||||||||||| |||||||||||||||    |||| |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||    
T  10130031 ttatacctttcttctaacaatggacatccttgaatgcacagttgcataagagaatcagggaggctgtcttctggtaatgactctagcttttcacaatccc 10129932  T
Q  267 acaattgaagtaatttcagcgaggaagggag 297  Q
    | || | |||| |||||||||||||||||||    
T  10129931 aaaagtcaagtgatttcagcgaggaagggag 10129901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 10372768 - 10372965
Alignment:
Q  65 aacatacctgaaat-gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttc 163  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||  || || || | |||||  |||||||||||||||||||||||||||||||||    
T  10372768 aacatacctgaaaacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttc 10372867  T
Q  164 cttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcaca 261  Q
    ||||||||||||||| |||||||||| |||| || ||||  ||||  ||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  10372868 cttttatacctttcttctaacaatgggcatcccataatgaccagtctcttcagagaggaagggaggctgtcttctggtaatgactcaagcttttcaca 10372965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 10583808 - 10583561
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaat-gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgg 149  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||  | ||| || | ||||| ||||||||||||||||||||    
T  10583808 ggtaggaaatgtggaacatacctgaaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatgacagggatgtgagcaattttgg 10583709  T
Q  150 accaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactc 249  Q
    |||||| ||| |||||||||||||||||| |||||||||| ||       |||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  10583708 accaatattcattccttttatacctttcttctaacaatgggcaaaattggatggtcagtcgctcaagagagtcagggaggctgtcttctggtaatgactc 10583609  T
Q  250 aagcttttcacatttccac-aattgaagtaatttcagcgaggaagggag 297  Q
     ||  || ||||   |||| ||||||||| |||||||||||||||||||    
T  10583608 gagtcttacaca-acccacaaattgaagtgatttcagcgaggaagggag 10583561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 11772430 - 11772256
Alignment:
Q  79 gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttct 178  Q
    ||||||||| ||||| | |||||||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  11772430 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 11772332  T
Q  179 actaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagct 254  Q
     |||||||||| |||| |  ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  11772331 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 11772256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 254
Target Start/End: Original strand, 11778855 - 11779029
Alignment:
Q  79 gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttct 178  Q
    ||||||||| ||||| | |||||||||||||| |||||| || | ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  11778855 gggaacacagcttgt-tctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 11778953  T
Q  179 actaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagct 254  Q
     |||||||||| |||| |  ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  11778954 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaatgactcaagct 11779029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 261
Target Start/End: Original strand, 10360658 - 10360855
Alignment:
Q  65 aacatacctgaaat-gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttc 163  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||  || || || | |||||  |||||||||||||||||||| ||||||||||||    
T  10360658 aacatacctgaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttc 10360757  T
Q  164 cttttatacctttctactaacaatggac-atcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcaca 261  Q
    ||||||||||||||| |||||||||| | |||  |  |||  ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  10360758 cttttatacctttcttctaacaatgggcaatcata-gatgtccagttccttaagagagtcagggaggctgtcttctggtaatgatttaagcttttcaca 10360855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 297
Target Start/End: Complemental strand, 10531989 - 10531760
Alignment:
Q  67 catacctgaaatgggaacacaacttgtctatcatattgtgactt-cttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcct 165  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||| |||  ||  ||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  10531989 catacctgaaacgggaacacaacttgtct-tcatattgtaacttgcttgtttattat-tatgacagggatgtgagaaattttggaccaattttccttcct 10531892  T
Q  166 tttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttc 265  Q
    ||||||||||||| |||||||||| ||   | | || |  ||| | |||||||||  ||||||||||||||||||||||||||||||  || ||||  ||    
T  10531891 tttatacctttcttctaacaatgggcaaaactcgatagtgagtagtttaagagaggaagggaggctgtcttctggtaatgactcaagtcttacacaactc 10531792  T
Q  266 cacaattgaagtaatttcagcgaggaagggag 297  Q
     | ||||||||| | |||||||||||||||||    
T  10531791 gaaaattgaagtgacttcagcgaggaagggag 10531760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 261
Target Start/End: Complemental strand, 10503857 - 10503666
Alignment:
Q  69 tacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcctttt 168  Q
    ||||||||| ||||||||| | ||||  |||||||||||||| | |||  || | ||||| ||||||||||| |||||||||||||||||||||||||||    
T  10503857 tacctgaaacgggaacacagcctgtcc-tcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttcctttt 10503759  T
Q  169 atacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcaca 261  Q
    |||||||||| ||||   ||| ||||    ||||  |||| |||||||||| ||||| |||||||||||||||||||| | ||||||||||||    
T  10503758 atacctttcttctaatgttgggcatctttgaatgatcagtagcttaagagaatcaggaaggctgtcttctggtaatgagtaaagcttttcaca 10503666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 10092146 - 10091974
Alignment:
Q  125 atgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcag 224  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||| ||||     |||||||   ||    
T  10092146 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatcccataatgtacagagtgataagagatgaag 10092047  T
Q  225 ggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    |||||||||||||||||||||| |||||| ||| ||| |  | ||||  |||| ||||||||||||| |||||    
T  10092046 ggaggctgtcttctggtaatgaatcaagcattttacaatcactcaatctaagtgatttcagcgaggacgggag 10091974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 125 - 297
Target Start/End: Complemental strand, 10199028 - 10198856
Alignment:
Q  125 atgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcag 224  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||| ||||     |||||||   ||    
T  10199028 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgggcatcccataatgtacagagtgataagagatgaag 10198929  T
Q  225 ggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    |||||||||||||||||||||| |||||| ||| ||| |  | ||||  |||| ||||||||||||| |||||    
T  10198928 ggaggctgtcttctggtaatgaatcaagcattttacaatcactcaatctaagtgatttcagcgaggacgggag 10198856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 297
Target Start/End: Complemental strand, 10680731 - 10680558
Alignment:
Q  124 tatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtca 223  Q
    ||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||| ||   |   || |  ||| | |||||||||  |    
T  10680731 tatgacagggatgtgagaaattttggaccgatgttcattccttttatacctttcttctaacaatgggcaaaacttgatagtgagtagtttaagagaggaa 10680632  T
Q  224 gggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    ||||||||||||||||||||  |||||||  || ||||  || | ||||||||| |||||||||||||||||||    
T  10680631 gggaggctgtcttctggtaacaactcaagtcttacacaactcaaaaattgaagtgatttcagcgaggaagggag 10680558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 10086354 - 10086157
Alignment:
Q  97 tcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgc 196  Q
    ||||||||||| |||  |||| || | ||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||  |||||| ||  |        
T  10086354 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaaagggaaaaat 10086255  T
Q  197 acaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagg 294  Q
    || |||  |||  |||| ||||| |||||||||| |||||| |||||||| |||||  |||||||  |||| | || |||| ||||||||||||||||    
T  10086254 acgatgctcagacgcttcagagaatcagggaggcagtcttccggtaatgattcaagtctttcacaactccaaatttcaagtgatttcagcgaggaagg 10086157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 10193274 - 10193077
Alignment:
Q  97 tcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgc 196  Q
    ||||||||||| |||  |||| || | ||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||  |||||| ||  |        
T  10193274 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaaagggaaaaat 10193175  T
Q  197 acaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagg 294  Q
    || |||   ||  |||| ||||| |||||||||| |||||| |||||||| |||||  |||||||  |||| | || |||| ||||||||||||||||    
T  10193174 acgatgcttagacgcttcagagaatcagggaggcagtcttccggtaatgattcaagtctttcacaactccaaatttcaagtgatttcagcgaggaagg 10193077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 9980763 - 9980724
Alignment:
Q  14 agcataggacccatgagatgatatgaaaatattaagaggt 53  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  9980763 agcagaggacccatgagatgatatgaaaatattaagaggt 9980724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 10035300 - 10035261
Alignment:
Q  14 agcataggacccatgagatgatatgaaaatattaagaggt 53  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  10035300 agcagaggacccatgagatgatatgaaaatattaagaggt 10035261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 10130212 - 10130173
Alignment:
Q  14 agcataggacccatgagatgatatgaaaatattaagaggt 53  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  10130212 agcagaggacccatgagatgatatgaaaatattaagaggt 10130173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 10263998 - 10263959
Alignment:
Q  14 agcataggacccatgagatgatatgaaaatattaagaggt 53  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  10263998 agcagaggacccatgagatgatatgaaaatattaagaggt 10263959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 10430720 - 10430759
Alignment:
Q  14 agcataggacccatgagatgatatgaaaatattaagaggt 53  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  10430720 agcagaggacccatgagatgatatgaaaatattaagaggt 10430759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 10583566 - 10583492
Alignment:
Q  223 agggaggctgtcttctggtaatgactcaagcttttcacatttccacaattg-aagtaatttcagcgaggaagggag 297  Q
    ||||||||||||||||||||||||| |||||||||||||  |||| || || |||| ||||||| |||||||||||    
T  10583566 agggaggctgtcttctggtaatgacccaagcttttcaca-atccataaatgaaagtgatttcagtgaggaagggag 10583492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 11242500 - 11242551
Alignment:
Q  134 atgtgagcaattttggaccaatgttccttccttttatacctttctactaaca 185  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||| ||||||    
T  11242500 atgtgagctattttggaccaatgttcctgcttttgatacctttcttctaaca 11242551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 51 - 297
Target Start/End: Original strand, 54446 - 54692
Alignment:
Q  51 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||  |||||| |||||||||||||||||||||    
T  54446 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttgga 54545  T
Q  151 ccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactca 250  Q
    |||||||||||||||||||||||||||| |||||||||| || |   | ||| |||||| ||||||||| |||||||||||||||||||||||||||||     
T  54546 ccaatgttccttccttttatacctttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaatgactct 54645  T
Q  251 agcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    ||||||| ||| |   | |||| |||| |||||||||||||||||||    
T  54646 agctttttacaatcataaaattcaagtgatttcagcgaggaagggag 54692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 54374 - 54413
Alignment:
Q  14 agcataggacccatgagatgatatgaaaatattaagaggt 53  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  54374 agcagaggacccatgagatgatatgaaaatattaagaggt 54413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 297
Target Start/End: Original strand, 17849840 - 17850013
Alignment:
Q  124 tatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtca 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |  || ||||||  ||||  |||| |||||||||||  |    
T  17849840 tatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcgccaaatgaccagtcgcttaagagaggaa 17849939  T
Q  224 gggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
    |||||||||||||||||||| ||||||||  ||| ||| |  || |||| |||  ||||||| |||||||||||    
T  17849940 gggaggctgtcttctggtaacgactcaagtcttttacaataacaaaattcaagcgatttcagtgaggaagggag 17850013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 297
Target Start/End: Complemental strand, 26910065 - 26909867
Alignment:
Q  99 atattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgcac 198  Q
    ||||| |||||| || ||| || | ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||          
T  26910065 atattatgacttgttgatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgggcaagatga 26909966  T
Q  199 aatggacagttgcttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagggag 297  Q
     ||   |||   || ||||||||| ||||||||||||||||||||||||||||| || |||||     | ||||||||  |||||||||||||||||||    
T  26909965 catttccagcatctcaagagagtcggggaggctgtcttctggtaatgactcaagtttctcacagccataaaattgaagatatttcagcgaggaagggag 26909867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 294
Target Start/End: Original strand, 44954592 - 44954746
Alignment:
Q  139 agcaattttggaccaatgttccttccttttatacctttctactaacaatggacatcgcacaatggacagttgcttaagagagtcagggaggctgtcttct 238  Q
    |||||||||||||||||||||||||||| ||||||||||| || | |  || ||||||  ||||  |||| | ||||||||||  |||||||| ||||||    
T  44954592 agcaattttggaccaatgttccttccttctatacctttcttctgatacagggcatcgccaaatgaccagtcgattaagagagttggggaggctttcttct 44954691  T
Q  239 ggtaatgactcaagcttttcacatttccacaattgaagtaatttcagcgaggaagg 294  Q
    ||||| |||||||| | ||||||   | | ||||||||| ||||||||||||||||    
T  44954692 ggtaacgactcaag-tcttcacaaaacaaaaattgaagtgatttcagcgaggaagg 44954746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 11488164 - 11488114
Alignment:
Q  211 cttaagagagtcagggaggctgtcttctggtaatgactcaagcttttcaca 261  Q
    ||||||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  11488164 cttaagagagtcagggaggttttctactggtaatgacccaagcttttcaca 11488114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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