View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10548_2 (Length: 490)

Name: NF10548_2
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10548_2
NF10548_2
[»] chr6 (5 HSPs)
chr6 (1-490)||(10082247-10082736)
chr6 (116-490)||(10098126-10098505)
chr6 (1-110)||(28694668-28694777)
chr6 (1-110)||(4443500-4443609)
chr6 (1-110)||(13512507-13512616)
[»] chr2 (3 HSPs)
chr2 (1-110)||(37363985-37364094)
chr2 (1-110)||(35600593-35600702)
chr2 (1-110)||(40656395-40656504)
[»] chr8 (1 HSPs)
chr8 (1-110)||(9764365-9764473)
[»] chr7 (2 HSPs)
chr7 (1-110)||(18334410-18334519)
chr7 (1-110)||(38702728-38702837)
[»] chr4 (1 HSPs)
chr4 (1-110)||(38965824-38965933)
[»] chr5 (2 HSPs)
chr5 (1-110)||(33886912-33887021)
chr5 (1-110)||(37567325-37567434)
[»] chr1 (1 HSPs)
chr1 (1-110)||(34676485-34676594)
[»] chr3 (2 HSPs)
chr3 (1-110)||(26249337-26249446)
chr3 (1-110)||(33901456-33901565)
[»] scaffold0164 (1 HSPs)
scaffold0164 (1-110)||(232-341)


Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 10082247 - 10082736
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  10082247 tcatcatcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttccactccgctgcc 10082346  T
Q  101 caacaccttgttcagttgaccttttaaattaataattgcatgatacttttgtagatataataattatagacatgagaatcaccagaataacactaacact 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  10082347 caacaccttgttcaattgaccttttaaattaataattgcatgatacttttgtagatataataattatagacatgagaatcaccaaattaacagtaacact 10082446  T
Q  201 ctcaatgatggcacacaattctaagtacaaattaatagcaccacaccaataatgtatgttttgcaaccaacatcccacattgaatagcaccaaggtagga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10082447 ctcaatgatggcacacaattctaagtacaaattaatagcaccacaccaataatgtatgttttgcaaccaacatcccacattgaatagcaccaaggtagga 10082546  T
Q  301 cacaagctgcaacacatacaccatatgttgcagtgcttttaaggtttgctaagtatcgtaccaccatacaaatggtctagagtgatnnnnnnnttatttc 400  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||       |||||||    
T  10082547 cacaagctgcaacacatgcaccatatgttgcagtgcttttaaggtttgctaagtattgtaccaccatacaaatggtctatagtgataaaaaaattatttc 10082646  T
Q  401 cgtagatctcatgtttatgttgaaaattccattagagcaaaatatcacgacttgacaaatttgaggctattatctcgcatcatattcgat 490  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10082647 ggtagatctcatgtttatgttgaaaattccattagagcacaatatcacgacttgacaaatttgaggctattatctcgcatcatattcgat 10082736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 116 - 490
Target Start/End: Original strand, 10098126 - 10098505
Alignment:
Q  116 ttgaccttttaaattaataattgcatgatacttttgtagatataataattatagacatgagaatcaccagaataacactaacactctcaat--------- 206  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||             
T  10098126 ttgaccttttaaattaataattccatggtacttctgtagatataataattatagacatgagaaacaccaaaataacactaacactctcaatcatctcaat 10098225  T
Q  207 gatggcacacaattctaagtacaaattaatagcaccacaccaataatgtatgttttgcaaccaacatcccacattgaatagcaccaaggtaggacacaag 306  Q
    |||||||||||| ||| | |||||||||||| |||||| || || |||   |  ||||||||||||||||||  ||||||||||||||||||||||||||    
T  10098226 gatggcacacaaatctcaatacaaattaataacaccacccctatgatgggggcattgcaaccaacatcccaccatgaatagcaccaaggtaggacacaag 10098325  T
Q  307 ctgcaacacatacaccatatgttgcagtgcttttaaggtttgctaagtatcgtaccaccatacaaatggtctagagtgatnnnnnnnttatttccgtaga 406  Q
    ||||||||| ||||||||| ||||||||||||||| ||| |||||||||| | ||||||||||||| |||||||||| |        ||||||  |||||    
T  10098326 ctgcaacacgtacaccata-gttgcagtgcttttatggtctgctaagtattgaaccaccatacaaagggtctagagtaa---aacatttattttagtaga 10098421  T
Q  407 tctcatgtttatgttgaaaattccattagagcaaaatatcacgacttgacaaatttgaggctattatctcgcatcatattcgat 490  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||    
T  10098422 tctcatgtttatgttgaaaatttcattagagtaaaatatcacgatttgacaaatttgaggcttttctctcgcatcatattcgat 10098505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 28694777 - 28694668
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  28694777 tcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 28694678  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  28694677 caacaccttg 28694668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4443500 - 4443609
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  4443500 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 4443599  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  4443600 caacaccttg 4443609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 13512616 - 13512507
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  13512616 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 13512517  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  13512516 caacaccttg 13512507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 37363985 - 37364094
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  37363985 tcatcatcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttccactctgctgcc 37364084  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  37364085 caacaccttg 37364094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35600702 - 35600593
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  35600702 tcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 35600603  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  35600602 caacaccttg 35600593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40656504 - 40656395
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  40656504 tcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 40656405  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  40656404 caacaccttg 40656395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 9764473 - 9764365
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||    
T  9764473 tcatcatcttcgcc-tcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttctactatgctgcc 9764375  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  9764374 caacaccttg 9764365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 18334410 - 18334519
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  18334410 tcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 18334509  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  18334510 caacaccttg 18334519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38702728 - 38702837
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  38702728 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 38702827  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  38702828 caacaccttg 38702837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 38965824 - 38965933
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  38965824 tcatcctcttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 38965923  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  38965924 caacaccttg 38965933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33886912 - 33887021
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  33886912 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 33887011  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  33887012 caacaccttg 33887021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 37567325 - 37567434
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  37567325 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 37567424  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  37567425 caacaccttg 37567434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 34676485 - 34676594
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||| | | ||||||||||||||||||||    
T  34676485 tcatcatcttcgccctcaccatacacttcataggggtcgtccgcatcatcagcacaaactggaggagccctcacactctctcggcttccactctgctgcc 34676584  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  34676585 caacaccttg 34676594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26249446 - 26249337
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| | | ||||||||||||||||||||    
T  26249446 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacaccctggaggagccctcacactctctcggcttccactctgctgcc 26249347  T
Q  101 caacaccttg 110  Q
    ||||||||||    
T  26249346 caacaccttg 26249337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33901456 - 33901565
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||| | | |||||||||||| |||||||    
T  33901456 tcatcctcttcgccctcaccatacacttcataggggtcttccgcatcatcatcacacactagaggagccctcacactctctcggcttccactatgctgcc 33901555  T
Q  101 caacaccttg 110  Q
    || |||||||    
T  33901556 caccaccttg 33901565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 341 - 232
Alignment:
Q  1 tcatcatcttcaccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcc 100  Q
    ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||    
T  341 tcatcctcttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcc 242  T
Q  101 caacaccttg 110  Q
     || ||||||    
T  241 taataccttg 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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