View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10548_3 (Length: 482)
Name: NF10548_3
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10548_3 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 52 - 420
Target Start/End: Original strand, 36691488 - 36691856
Alignment:
| Q |
52 |
ataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtagtatcatcattcaaccaatcagaaagttttccatttgaaat |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691488 |
ataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttttagtatcatcattcaaccaatcagaaagttttccatttgaaat |
36691587 |
T |
|
| Q |
152 |
gtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatt |
251 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691588 |
gtattgatacaccaaaactctttcatttttttcttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatt |
36691687 |
T |
|
| Q |
252 |
tctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctacgaaaatgcaaccgttggaaagtgttgttttgtacattatcccagtca |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691688 |
tctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctgcgaaaatgcaaccgttggaaagtgttgttttgtacattatcccagtca |
36691787 |
T |
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| Q |
352 |
ctcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatct |
420 |
Q |
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| T |
36691788 |
ctcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatct |
36691856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 52 - 418
Target Start/End: Original strand, 23655172 - 23655535
Alignment:
| Q |
52 |
ataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtagtatcatcattcaaccaatcagaaagttttccatttgaaat |
151 |
Q |
| |
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|||| |||||||||| ||||||||||||| ||||||| |||||||| ||| | || |||| || | ||| | |||||| || |||||||||| || |
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| T |
23655172 |
ataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttagtttctt---tcagcttatcagatagccttccatttgacat |
23655268 |
T |
|
| Q |
152 |
gtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatt |
251 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||||| ||||||||||| | || ||||||||||||||||||||||||||||||| ||||| |
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| T |
23655269 |
gtattgatacaccaaaattctttcattgtttccttcttctatgctaaaaccaatcaatgaaactatgtttctatgactgtattgtcccaaaatcattatt |
23655368 |
T |
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| Q |
252 |
tctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctacgaaaatgcaaccgttggaaagtgttgttttgtacattatcccagtca |
351 |
Q |
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||| | || || ||||||||| |||||||||||| |||||||||| | | || | | |||||| | ||| | || ||||||||||| || | | |
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| T |
23655369 |
tctaactcaaaccttttgataattgattgagaatcatatagtctcttaaccgccaagaaacgaccgttcggaagagctgccttgtacattattccgatta |
23655468 |
T |
|
| Q |
352 |
ctcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcat |
418 |
Q |
| |
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|||| || ||||||||||||||| ||||| |||| ||||||||| | | ||||||||||||||| |
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| T |
23655469 |
ctccaacaccaatgacattgtccaagctaaaatatttggttgcatgacaaagttttgtgaagttcat |
23655535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 52 - 418
Target Start/End: Complemental strand, 23803398 - 23803035
Alignment:
| Q |
52 |
ataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttgtagtatcatcattcaaccaatcagaaagttttccatttgaaat |
151 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||||| |||||||| ||| | || |||| || | ||| | |||||| || |||||||||| || |
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| T |
23803398 |
ataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttagtttctt---tcagcttatcagatagccttccatttgacat |
23803302 |
T |
|
| Q |
152 |
gtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatt |
251 |
Q |
| |
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||||||||||||||||| ||||||| |||| ||||||| ||||||||||| | || ||||||||||||||||||||||||||||||| ||||| |
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| T |
23803301 |
gtattgatacaccaaaattctttcattgtttccttcttctatgctaaaaccaatcaatgaaactatgtttctatgactgtattgtcccaaaatcattatt |
23803202 |
T |
|
| Q |
252 |
tctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctacgaaaatgcaaccgttggaaagtgttgttttgtacattatcccagtca |
351 |
Q |
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||| | || || ||||||||| |||||||||||| |||||||||| | | || | | |||||| | ||| | || ||||||||||| || | | |
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| T |
23803201 |
tctaactcaaaccttttgataattgattgagaatcatatagtctcttaaccgccaagaaacgaccgttcggaagagctgccttgtacattattccgatta |
23803102 |
T |
|
| Q |
352 |
ctcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcat |
418 |
Q |
| |
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|||| || ||||||||||||||| ||||| |||| ||||||||| | | ||||||||||||||| |
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| T |
23803101 |
ctccaacaccaatgacattgtccaagctaaaatatttggttgcatgacaaagttttgtgaagttcat |
23803035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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