View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10548_5 (Length: 385)
Name: NF10548_5
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10548_5 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 26 - 369
Target Start/End: Original strand, 757954 - 758298
Alignment:
| Q |
26 |
atataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaacaaagttcaatgcaacattaatttgtcnnnnnnnnnnnn-gaagtt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
757954 |
atataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaacaaagttcaatgcaacattaatttatcaaaaaaaaaaaaagaagtt |
758053 |
T |
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| Q |
125 |
caatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtca |
224 |
Q |
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| T |
758054 |
caatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtca |
758153 |
T |
|
| Q |
225 |
atttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaat |
324 |
Q |
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| T |
758154 |
atttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaat |
758253 |
T |
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| Q |
325 |
ggtgattatggctttgaatttgatcataaaaatccacagcacagg |
369 |
Q |
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| T |
758254 |
ggtgattatggctttgaatttgatcataaaaatccacagcacagg |
758298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 26 - 369
Target Start/End: Complemental strand, 36989422 - 36989073
Alignment:
| Q |
26 |
atataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaacaaagttcaatgcaacattaatttgtcnnnnnnnnnnnn------g |
119 |
Q |
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| T |
36989422 |
atataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaacaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaag |
36989323 |
T |
|
| Q |
120 |
aagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaaga |
219 |
Q |
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| T |
36989322 |
aagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaaga |
36989223 |
T |
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| Q |
220 |
tgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagaca |
319 |
Q |
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| T |
36989222 |
tgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagaca |
36989123 |
T |
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| Q |
320 |
acaatggtgattatggctttgaatttgatcataaaaatccacagcacagg |
369 |
Q |
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| T |
36989122 |
acaatggtgattatggctttgaatttgatcataaaaatccacagcacagg |
36989073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 26 - 369
Target Start/End: Complemental strand, 37014861 - 37014512
Alignment:
| Q |
26 |
atataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaacaaagttcaatgcaacattaatttgtcnnnnnnnnnnnn------g |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37014861 |
atataaatcaaaatgattaaatgtttcatatgattaagtacataatgatataaacaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaag |
37014762 |
T |
|
| Q |
120 |
aagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaaga |
219 |
Q |
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| T |
37014761 |
aagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaaga |
37014662 |
T |
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| Q |
220 |
tgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagaca |
319 |
Q |
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| T |
37014661 |
tgtcaatttatttgaaattttacttttaaatttagggcacattttggtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagaca |
37014562 |
T |
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| Q |
320 |
acaatggtgattatggctttgaatttgatcataaaaatccacagcacagg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014561 |
acaatggtgattatggctttgaatttgatcataaaaatccacagcacagg |
37014512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 19180800 - 19180896
Alignment:
| Q |
255 |
ggcacattttggtacctaaaattgaaat---ggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgat |
348 |
Q |
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|||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |
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| T |
19180800 |
ggcacattttggtaactaagattgaaatattggaagcttttgtaagaaactttaattaacttgagacaacaattgtgcttaagactttgaatttgat |
19180896 |
T |
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