View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10548_6 (Length: 357)

Name: NF10548_6
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10548_6
NF10548_6
[»] chr1 (10 HSPs)
chr1 (32-336)||(4570773-4571082)
chr1 (38-267)||(4014949-4015185)
chr1 (38-250)||(10218835-10219054)
chr1 (43-267)||(21855367-21855592)
chr1 (42-267)||(4016756-4016981)
chr1 (39-250)||(4366496-4366708)
chr1 (130-261)||(39379051-39379182)
chr1 (130-261)||(17560763-17560894)
chr1 (176-252)||(50645484-50645560)
chr1 (186-235)||(15961233-15961282)
[»] chr5 (5 HSPs)
chr5 (43-267)||(24330883-24331108)
chr5 (187-251)||(18964830-18964894)
chr5 (173-249)||(29597554-29597630)
chr5 (175-249)||(29647670-29647744)
chr5 (175-249)||(29642353-29642427)
[»] chr7 (44 HSPs)
chr7 (39-251)||(29921993-29922200)
chr7 (130-250)||(29867188-29867305)
chr7 (39-251)||(29859311-29859524)
chr7 (39-250)||(29106665-29106883)
chr7 (150-251)||(29874480-29874581)
chr7 (130-250)||(29881205-29881325)
chr7 (130-251)||(29454103-29454224)
chr7 (39-249)||(29899225-29899442)
chr7 (39-204)||(29885105-29885271)
chr7 (133-244)||(29445663-29445774)
chr7 (181-251)||(14076678-14076748)
chr7 (181-251)||(14386706-14386776)
chr7 (181-252)||(1985954-1986025)
chr7 (182-251)||(660847-660916)
chr7 (138-251)||(29431001-29431111)
chr7 (181-249)||(19344577-19344645)
chr7 (175-251)||(20352089-20352165)
chr7 (175-251)||(22100487-22100563)
chr7 (187-250)||(19604464-19604527)
chr7 (134-251)||(29476340-29476457)
chr7 (130-227)||(29920067-29920164)
chr7 (175-251)||(22063636-22063712)
chr7 (175-233)||(20338918-20338976)
chr7 (175-261)||(20374493-20374579)
chr7 (187-252)||(18514786-18514851)
chr7 (183-251)||(6864807-6864875)
chr7 (181-249)||(22028628-22028696)
chr7 (176-252)||(22070106-22070182)
chr7 (175-231)||(22080862-22080918)
chr7 (39-83)||(29881113-29881157)
chr7 (133-240)||(29895418-29895528)
chr7 (176-251)||(19637217-19637292)
chr7 (176-251)||(24010378-24010453)
chr7 (189-251)||(13416911-13416973)
chr7 (181-251)||(20058057-20058127)
chr7 (175-233)||(36263047-36263105)
chr7 (175-228)||(9807818-9807871)
chr7 (176-249)||(12819918-12819991)
chr7 (39-84)||(29867096-29867141)
chr7 (176-233)||(36255361-36255418)
chr7 (181-249)||(19722018-19722086)
chr7 (174-250)||(23993528-23993604)
chr7 (183-251)||(26003031-26003099)
chr7 (175-247)||(36260247-36260319)
[»] chr3 (4 HSPs)
chr3 (130-251)||(3625683-3625804)
chr3 (181-251)||(25901279-25901349)
chr3 (181-251)||(25915297-25915367)
chr3 (39-80)||(3625591-3625632)
[»] chr4 (11 HSPs)
chr4 (130-261)||(3557675-3557806)
chr4 (130-261)||(3560948-3561079)
chr4 (130-261)||(3565693-3565824)
chr4 (174-251)||(53774833-53774910)
chr4 (175-251)||(11970982-11971058)
chr4 (181-250)||(53430100-53430169)
chr4 (175-251)||(11981683-11981759)
chr4 (130-261)||(1686275-1686406)
chr4 (181-247)||(837776-837842)
chr4 (176-249)||(53790548-53790621)
chr4 (39-83)||(1686454-1686498)
[»] chr6 (9 HSPs)
chr6 (181-252)||(6921349-6921420)
chr6 (181-249)||(6954521-6954589)
chr6 (183-251)||(6947880-6947948)
chr6 (175-251)||(20770644-20770720)
chr6 (192-251)||(17369675-17369734)
chr6 (185-252)||(6935217-6935284)
chr6 (181-252)||(6942966-6943037)
chr6 (176-230)||(19746715-19746769)
chr6 (181-245)||(24950150-24950214)
[»] chr2 (8 HSPs)
chr2 (184-252)||(14514903-14514971)
chr2 (181-247)||(20975558-20975624)
chr2 (187-251)||(554482-554546)
chr2 (181-249)||(18908811-18908879)
chr2 (181-249)||(18913559-18913627)
chr2 (181-249)||(18920767-18920835)
chr2 (181-236)||(25698507-25698562)
chr2 (180-230)||(20967699-20967749)
[»] scaffold0867 (1 HSPs)
scaffold0867 (175-251)||(4669-4745)
[»] scaffold0649 (1 HSPs)
scaffold0649 (173-251)||(5430-5508)
[»] chr8 (2 HSPs)
chr8 (175-251)||(27618485-27618561)
chr8 (183-251)||(29390288-29390356)
[»] scaffold0354 (1 HSPs)
scaffold0354 (189-247)||(7471-7529)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 32 - 336
Target Start/End: Original strand, 4570773 - 4571082
Alignment:
Q  32 aacaagctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgc-tactat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  4570773 aacaagctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaactagcctactat 4570872  T
Q  131 tggtgt----gttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttg 226  Q
    ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570873 tggtgtgtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttg 4570972  T
Q  227 gactcaattgcttaaaattagttatagtgatcttctaatagcttactatgacttgcgtgacagtgacaaaaggtattttcaactgatgctattatttctt 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4570973 gactcaattgcttaaaattagttatagtgatcttctaatagcttactatgacttgcgtgacagtgacaaaaggtattttcaactgatgctattatttctt 4571072  T
Q  327 tctgatgatg 336  Q
    ||||| ||||    
T  4571073 tctgacgatg 4571082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 4015185 - 4014949
Alignment:
Q  38 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgt 136  Q
    ||||||||||||| |||||||||||||| ||| | ||||| |||||||  || |||||||| ||||||||||||| |||  ||| || | ||||||||||    
T  4015185 ctgttattgtttcacttgatttggagacagaggcgtacaagcaatacacagttcctcgtggcgttgatgaagtgctgcctgactcgccaactattggtgt 4015086  T
Q  137 gttgggaggctgcctttgtttttcttattcacacagggaaac------tgattttgttatatggcaaatgaagaaatttggggttgaagattcttggact 230  Q
    | |||||||||||||||||||||||||||  |||||||||||      |||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  4015085 gctgggaggctgcctttgtttttcttatttgcacagggaaactcattttgatattgttatatggcagatgaagaaatttggggttgaagattcttggact 4014986  T
Q  231 caattgcttaaaattagttatagtgatcttctaatag 267  Q
    ||||| |||||| |||||||   ||||||||||||||    
T  4014985 caattccttaaagttagttaccatgatcttctaatag 4014949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 10218835 - 10219054
Alignment:
Q  38 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgc---cgaacttg----ctactat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||| ||||| |||   || ||       | |||||    
T  10218835 ctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaacacaccaactat 10218934  T
Q  131 tggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggact 230  Q
    |||||||||||| || |||||||||||||||| ||  |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  10218935 tggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagattcttggact 10219034  T
Q  231 caattgcttaaaattagtta 250  Q
    ||||| ||||||||||||||    
T  10219035 caattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 21855592 - 21855367
Alignment:
Q  43 attgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgtgttgg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   || | |||||||||| |||     
T  21855592 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 21855493  T
Q  142 gaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaa 241  Q
    | ||||| ||||||||||| |||||  ||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||| | |||||    
T  21855492 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaa 21855393  T
Q  242 aattagttatagtgatcttctaatag 267  Q
    | |||||||   | ||||||||||||    
T  21855392 agttagttaccataatcttctaatag 21855367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 42 - 267
Target Start/End: Complemental strand, 4016981 - 4016756
Alignment:
Q  42 tattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgtgttg 140  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||| |||||   || ||| | ||||| ||||||||    
T  4016981 tattgtttctcttgatttgg-gacggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttacatgccaactattagtgtgttg 4016883  T
Q  141 ggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgctta 240  Q
    || |||||||||||||||||||||||  | ||| ||||  ||||   ||| ||||| |||||||||||||| ||||||||||| |||||||| ||| |||    
T  4016882 gggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgttta 4016783  T
Q  241 aaattagttatagtgatcttctaatag 267  Q
    || |||||||   ||||||||||||||    
T  4016782 aatttagttaccatgatcttctaatag 4016756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 4366708 - 4366496
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc----gaacttgctactattggt 134  Q
    |||||||||||| |||||| |||  || |||||||||||||||||| || ||||||||||  |||| |||||||| ||    ||||   | ||  |||||    
T  4366708 tgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccacctactgaac---caacagttggt 4366612  T
Q  135 gtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaat 234  Q
    |||||||| | |||||||||||||||||||||  ||| | |||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||| ||    
T  4366611 gtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaagagtcttggactccat 4366512  T
Q  235 tgcttaaaattagtta 250  Q
    | |||||| |||||||    
T  4366511 ttcttaaagttagtta 4366496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 39379182 - 39379051
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||||| | ||| ||||||||||||||||   ||||  ||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  230 tcaattgcttaaaattagttatagtgatcttc 261  Q
    |||||| |||||||| ||||||  ||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttc 39379051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 17560894 - 17560763
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||||| | ||| ||||||||||||||||   ||| |||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  17560894 ttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaagattcttggac 17560795  T
Q  230 tcaattgcttaaaattagttatagtgatcttc 261  Q
     | ||| |||| |||||||||||  |||||||    
T  17560794 accattccttataattagttataacgatcttc 17560763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 50645560 - 50645484
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||| |||||||||| |||||||||||| | ||||| ||| |||| ||||||| ||||||  |||||||||||||||    
T  50645560 aactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttata 50645484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 15961233 - 15961282
Alignment:
Q  186 gttatatggcaaatgaagaaatttggggttgaagattcttggactcaatt 235  Q
    ||||||||| |||||||||||||||| | |||||| ||||||||||||||    
T  15961233 gttatatggaaaatgaagaaatttggagctgaagaatcttggactcaatt 15961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 24331108 - 24330883
Alignment:
Q  43 attgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgcta-ctattggtgtgttgg 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| |||  |||||||||| ||||||||   || | |||||||||| |||     
T  24331108 attgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattga 24331009  T
Q  142 gaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaa 241  Q
    | ||||| ||||||||||| |||||  ||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||| | |||||    
T  24331008 ggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaa 24330909  T
Q  242 aattagttatagtgatcttctaatag 267  Q
    | |||||||   | ||||||||||||    
T  24330908 agttagttaccataatcttctaatag 24330883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 18964894 - 18964830
Alignment:
Q  187 ttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||| |||||    
T  18964894 ttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatttgttat 18964830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 29597630 - 29597554
Alignment:
Q  173 ggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    ||||||| |||||||||||||||||||||   ||||||| |||||| | |||||||||||||| |||||||||||||    
T  29597630 ggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagtt 29597554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 29647670 - 29647744
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    ||||| |||||||||||||||||||||   |||||||  ||||| | |||||||||||||| |||||||||||||    
T  29647670 aaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29647744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 29642353 - 29642427
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    ||||| |||| ||||||||||||||||   |||||||  ||||| | |||||||||||||| |||||||||||||    
T  29642353 aaactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagtt 29642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 29922200 - 29921993
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgcc----gccgaacttgctactattggt 134  Q
    |||||| |||||||||||||| | |||||||||||||||||||||  || ||||||      |||||||||||||    || ||||   | ||  |||||    
T  29922200 tgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctc------ttgatgaagtgccatctgcagaac---caaccgttggt 29922110  T
Q  135 gtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaat 234  Q
    |||||||| ||||||||||||||||||||| |  |||  ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  29922109 gtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagattcttggtctcaat 29922010  T
Q  235 tgcttaaaattagttat 251  Q
    | |||| ||||||||||    
T  29922009 tccttagaattagttat 29921993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 29867188 - 29867305
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||||| | |||||||||||||||||||||  |   ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattctaa---ggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  230 tcaattgcttaaaattagtta 250  Q
    |||||| |||| |||||||||    
T  29867285 tcaattccttagaattagtta 29867305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 29859311 - 29859524
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgcc-gaacttgctactattggtgtg 137  Q
    |||||||||||| |||||||||| ||  || ||||||||||||||| |  ||||||||||| ||||||| |||||||| |   |  | ||||||||||||    
T  29859311 tgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgccgcctgtgataccaactattggtgtg 29859410  T
Q  138 ttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgc 237  Q
    ||||| | |   ||||||||||||||||   ||| ||||| |||||| ||||||||| | |||||||||||||| ||||||||||||||||| | ||| |    
T  29859411 ttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttc 29859510  T
Q  238 ttaaaattagttat 251  Q
    ||||||||||||||    
T  29859511 ttaaaattagttat 29859524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 29106665 - 29106883
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaacttgctacta-ttggtgtg 137  Q
    |||||||||||| ||||||| |  || |||||||||||||||||||| | ||||||||||| |||||||||||||| | ||   || |  | ||||||||    
T  29106665 tgttattgtttcacttgattggaggatggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgtg 29106764  T
Q  138 ttgggaggctgcctttgtttttcttattcacacagggaaac------tgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactc 231  Q
    ||||| |||||||||||||||||||||| | ||    ||||      |||||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  29106765 ttggggggctgcctttgtttttcttatttatacgtaaaaacagattttgattttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T
Q  232 aattgcttaaaattagtta 250  Q
    || |  |||||||||||||    
T  29106865 aactttttaaaattagtta 29106883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 29874480 - 29874581
Alignment:
Q  150 ctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    ||||||||||||||||   ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  29874480 ctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagtt 29874579  T
Q  250 at 251  Q
    ||    
T  29874580 at 29874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 29881205 - 29881325
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||||  | ||||||||| |||| |||||   ||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  230 tcaattgcttaaaattagtta 250  Q
    |||||| |||| |||||||||    
T  29881305 tcaattccttagaattagtta 29881325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 29454224 - 29454103
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||| ||||| ||  |||||||||||||||||||  ||| |||| | ||||||||||||||||  |||| ||||||||| |||||||||||||||||    
T  29454224 ttggtgttttggggggaagcctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggac 29454125  T
Q  230 tcaattgcttaaaattagttat 251  Q
    ||||||  ||||||||||||||    
T  29454124 tcaattctttaaaattagttat 29454103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 29899225 - 29899442
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgtg 137  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| |||||| |||| |||||||||||||| | |      | ||  ||||||||    
T  29899225 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgtggagccaacatttggtgtg 29899324  T
Q  138 ttgggaggctgcctttgtttttcttattcacacagggaaac------tgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactc 231  Q
    ||||| ||||||||||||||||||| ||   |||   | ||      |||||||||||||||||| ||||||||||||||||||||||| || |||||||    
T  29899325 ttggggggctgcctttgtttttcttgtttttacaataataccaattttgattttgttatatggcagatgaagaaatttggggttgaagagtcctggactc 29899424  T
Q  232 aattgcttaaaattagtt 249  Q
    ||||  | ||||||||||    
T  29899425 aatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 29885105 - 29885271
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccg-ccgaacttgctactattggtgtg 137  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||| |||||| |||| |||||||||||||| | |      | ||  ||||||||    
T  29885105 tgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgtggagccaacatttggtgtg 29885204  T
Q  138 ttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaaga 204  Q
     | || ||||||||||||||||||||||    || |||||||||||||||||||||||| |||||||    
T  29885205 ctagggggctgcctttgtttttcttatttttccaaggaaactgattttgttatatggcagatgaaga 29885271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 29445774 - 29445663
Alignment:
Q  133 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactca 232  Q
    |||||||||| |||| |||||||| ||||||||   ||| |||||| |||||| |||||||||| |||||| |||| ||||||||||| |||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactca 29445675  T
Q  233 attgcttaaaat 244  Q
    ||| || |||||    
T  29445674 atttctaaaaat 29445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 14076678 - 14076748
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14076748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 14386706 - 14386776
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||| |||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 14386776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 1986025 - 1985954
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||||||| | |||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  1986025 attttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgtttaaaattagttata 1985954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 660916 - 660847
Alignment:
Q  182 ttttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||||||||||||| |||||| ||||| | |||||||| |||||||||||||| |||||||||||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttat 660847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 29431111 - 29431001
Alignment:
Q  138 ttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgc 237  Q
    ||||| || ||||||||||||||||||||  |   ||| ||  |||||||||||||||  |||| ||||||||||| | ||||||||||||| ||||| |    
T  29431111 ttggggggatgcctttgtttttcttattctaa---ggacacctattttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattcc 29431015  T
Q  238 ttaaaattagttat 251  Q
    ||||||||||||||    
T  29431014 ttaaaattagttat 29431001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 19344645 - 19344577
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||||||||||| |||| | ||||||| |||||| | |||||||||||||| |||||||||||||    
T  19344645 attttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagtt 19344577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 20352089 - 20352165
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||||| |||||| |||||||| ||||||| ||||||||||| ||||||||| |  ||||||||||||||    
T  20352089 aaactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagttat 20352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 22100487 - 22100563
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| |||| ||||||||||| ||  | ||||||||||||    
T  22100487 aaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 22100563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 19604527 - 19604464
Alignment:
Q  187 ttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtta 250  Q
    |||||||||| |||||| ||||||| |||||||| || ||||||||||| ||||||||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 29476457 - 29476340
Alignment:
Q  134 tgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaa 233  Q
    ||||||||| |||| |||||||| ||| ||||   ||| |||||| |||||| |||||||||| |||||| |||| |||  |||  | ||||||||||||    
T  29476457 tgtgttggggggcttcctttgttgttcctatttttacaaggaaaccgattttcttatatggcagatgaaggaattagggaatgacaactcttggactcaa 29476358  T
Q  234 ttgcttaaaattagttat 251  Q
    || |||||||| ||||||    
T  29476357 tttcttaaaataagttat 29476340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 29920164 - 29920067
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttgg 227  Q
    |||||||||||||||||||||||| || |||||||||  ||| |||||| || ||| | |||||| | ||||||||||| ||  ||||| ||||||||    
T  29920164 ttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattcttgg 29920067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 22063636 - 22063712
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||||||||||||||||||||| |||||||  || |||| ||||||||||| ||  | ||||||||||||    
T  22063636 aaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttat 22063712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 20338918 - 20338976
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaa 233  Q
    ||||| ||||||| |||||| |||||||| |||| || |||||||||||||||||||||    
T  20338918 aaactcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaa 20338976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 20374579 - 20374493
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttatagtgatcttc 261  Q
    ||||| ||||||| |||||| |||||||| ||||||| |||| |||||| |||| |||| |  ||||||||||||||| | ||||||    
T  20374579 aaactcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagttataataatcttc 20374493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 18514851 - 18514786
Alignment:
Q  187 ttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||||||| ||||| |  ||||||| |||||| | |||||||||||||| ||||||||||||||||    
T  18514851 ttatatggaaaatggacgaatttggagttgaaaactcttggactcaattccttaaaattagttata 18514786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 6864875 - 6864807
Alignment:
Q  183 tttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||||  ||||||| ||||||| |||||||| ||||||||||| || ||||||| |||||||    
T  6864875 tttgtaatatggttaatgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttat 6864807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 22028628 - 22028696
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||||||||| |||||| | | | ||| |||||||| |||||||||||||| ||||| |||||||    
T  22028628 attttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattacttaagattagtt 22028696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 22070106 - 22070182
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||| ||||| ||||||||||||||||| ||||||| ||| |||| ||||||||||  ||  | |||||||||||||    
T  22070106 aactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaattagttata 22070182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 22080862 - 22080918
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactc 231  Q
    ||||| ||||| ||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  22080862 aaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactc 22080918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 29881113 - 29881157
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaata 83  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  29881113 tgttattgtttcacttgatttggggactgagacatacaatcaata 29881157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 29895418 - 29895528
Alignment:
Q  133 gtgtgttgggaggctgcctttgtttttcttattcac---acagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    |||| ||||| ||||| |||||||||||||||||     ||| |||||  || |||||| ||||||| ||||||||||||||| | ||||| |||||||     
T  29895418 gtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaatttgggatagaagagtcttggag 29895517  T
Q  230 tcaattgctta 240  Q
    |||||| ||||    
T  29895518 tcaattactta 29895528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 19637292 - 19637217
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||| ||||||||||||||||| ||||||| ||| |||| || |||| ||   | |||||||||||||||    
T  19637292 aactgattttattatatggcaaatgaaggaatttggagttcaagagtcgtggattcggctccttaaaattagttat 19637217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 24010378 - 24010453
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||| |||||| ||||||| |||||| | |  |||||| |||| |||||||||||||| ||||| |||||||||    
T  24010378 aactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattacttaagattagttat 24010453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 13416973 - 13416911
Alignment:
Q  189 atatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||||||||||||| ||||||| |||||||| ||||||  | ||||  ||||||||||||||    
T  13416973 atatggcaaatgaaggaatttggagttgaagagtcttgggttgaattcgttaaaattagttat 13416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 20058127 - 20058057
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||||||| ||||| || ||||  | |||||||| ||||||  |||||| |||||||||||||||    
T  20058127 attttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagttat 20058057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 36263047 - 36263105
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaa 233  Q
    |||||||||||||||||||| | ||| |  ||||||| |||||||| ||||||||||||    
T  36263047 aaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggactcaa 36263105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 9807818 - 9807871
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttgga 228  Q
    |||| ||||| ||||||||||| |||||| ||||||| |||||||| |||||||    
T  9807818 aaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 12819991 - 12819918
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||| |||||||| ||||||| |||| | ||||||| |||||| | || ||||||||||| |||||||| ||||    
T  12819991 aacttattttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagtt 12819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 29867096 - 29867141
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaatac 84  Q
    |||||||||||| |||||||||| ||| |||| |||||||||||||    
T  29867096 tgttattgtttcacttgatttggggactgagaaatacaatcaatac 29867141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 36255361 - 36255418
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaa 233  Q
    ||||| ||| ||||||||| ||||| | |||||||| |||||||| ||||||||||||    
T  36255361 aactggtttagttatatggaaaatggaaaaatttggagttgaagagtcttggactcaa 36255418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 19722018 - 19722086
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||| ||||| | |||| | ||||||| ||| ||||||||||||||||||| || ||||| ||||    
T  19722018 attttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaatcagtt 19722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 23993528 - 23993604
Alignment:
Q  174 gaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtta 250  Q
    |||||||| |||||| ||||||| |||||| | |  |||||| |||| ||||||||||||||  |||| ||||||||    
T  23993528 gaaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaattatttaagattagtta 23993604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 26003099 - 26003031
Alignment:
Q  183 tttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||| |||||||||||||  | | ||||||||||  |||||||||||||||| | ||| ||||||||    
T  26003099 tttgttttatggcaaatgaatgagtatggggttgaaagttcttggactcaattgttgaaacttagttat 26003031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 36260247 - 36260319
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattag 247  Q
    |||||||||||||||||||| | ||| |  ||||||| |||||||| ||||||| |||| |  ||||||||||    
T  36260247 aaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaacttattaaaattag 36260319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 3625683 - 3625804
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||||| | |||||||||||||||||||||  ||| || |||  || || |||||||||||||||||||||||||||||||||| ||||||||    
T  3625683 ttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaagagtcttggac 3625782  T
Q  230 tcaattgcttaaaattagttat 251  Q
    |||||| |||||||||||||||    
T  3625783 tcaatttcttaaaattagttat 3625804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 25901349 - 25901279
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||||||| |||||||| | ||| | ||| |||| ||||||| ||||||| | ||||||||||||    
T  25901349 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25901279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 25915367 - 25915297
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||||||| |||||||| | ||| | ||| |||| ||||||| ||||||| | ||||||||||||    
T  25915367 attttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttat 25915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 3625591 - 3625632
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatca 80  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  3625591 tgttattgtttcacttgatttggggactgagacatacaatca 3625632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 3557675 - 3557806
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||| | | ||| |||||||||||||||||  ||| |||||| |||||| |||||||||| |||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  230 tcaattgcttaaaattagttatagtgatcttc 261  Q
    |||||| |||||||||||||||  ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttc 3557806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 3561079 - 3560948
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||| ||||| |  ||||||||||||||||||||  ||| |||||| |||||| |||| ||||| ||||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  230 tcaattgcttaaaattagttatagtgatcttc 261  Q
    |||||| |||||||||||||||  ||||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttc 3560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 3565693 - 3565824
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||| | | ||||||||||||||||||||   | | | |||| |||||| |||||||||| |||||| |||||||||||||||| ||||||||    
T  3565693 ttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 3565792  T
Q  230 tcaattgcttaaaattagttatagtgatcttc 261  Q
    |||||| |||||||||||||||  ||||||||    
T  3565793 tcaatttcttaaaattagttatcatgatcttc 3565824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 53774833 - 53774910
Alignment:
Q  174 gaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  53774833 gaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 11971058 - 11970982
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||| |||| ||||||||||    
T  11971058 aaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttat 11970982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 53430169 - 53430100
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtta 250  Q
    ||||||| |||||||| |||||||||| |||||  |||||||||||||||||||| ||||||||||||||    
T  53430169 attttgtcatatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 11981759 - 11981683
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||||||||||||||||||||| ||||||| || ||||| || ||||||| ||| |||||||||||||||    
T  11981759 aaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttat 11981683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 1686406 - 1686275
Alignment:
Q  130 ttggtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggac 229  Q
    ||||||||||||| | |||||||||||||||||||||  | | |   ||  || || |||||||||| |||||| ||||||| ||||| || ||||||||    
T  1686406 ttggtgtgttgggggactgcctttgtttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttggcgttgacgagtcttggac 1686307  T
Q  230 tcaattgcttaaaattagttatagtgatcttc 261  Q
    |||||| ||||||  |||||||  ||||||||    
T  1686306 tcaatttcttaaatatagttattatgatcttc 1686275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 837776 - 837842
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattag 247  Q
    ||||||||||||||||||||||||| ||||| ||| |||| ||||||| ||||||  ||||||||||    
T  837776 attttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattag 837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 53790548 - 53790621
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||| ||||| |||||||| | ||||  ||||||||  ||||| | |||||||||||||| |||||||||||||    
T  53790548 aactcattttattatatggaagatgacaaaatttggatttgaacaatcttggactcaatttcttaaaattagtt 53790621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 1686498 - 1686454
Alignment:
Q  39 tgttattgtttctcttgatttggagacggagacatacaatcaata 83  Q
    |||||||||||| ||| |||||| ||| |||||||||||||||||    
T  1686498 tgttattgtttcacttaatttggggactgagacatacaatcaata 1686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||||||||| |||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 6954589 - 6954521
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||    
T  6954589 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 6954521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 6947948 - 6947880
Alignment:
Q  183 tttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||| | |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  6947948 tttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 6947880  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 20770644 - 20770720
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||||||||||||||||||||| |||||||  ||||||| || |||| |||||| |||||||||||||||    
T  20770644 aaacttattttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttat 20770720  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 17369675 - 17369734
Alignment:
Q  192 tggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttat 17369734  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 6935284 - 6935217
Alignment:
Q  185 tgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||||| |||||||||||| ||||||| ||| |||| ||||||||| |||| ||||||||||||||||    
T  6935284 tgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttata 6935217  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 6943037 - 6942966
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    |||||||||| | |||||||||| ||||||| |||||||| |||| ||| ||||| ||||||||||| ||||    
T  6943037 attttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattccttaaaattagatata 6942966  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 19746769 - 19746715
Alignment:
Q  176 aactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggact 230  Q
    |||||| ||||||||||||||||||||||| ||||| ||| |||| |||||||||    
T  19746769 aactgaatttgttatatggcaaatgaagaagtttggagttcaagagtcttggact 19746715  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 24950214 - 24950150
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaatt 245  Q
    |||||||||||||| | |||| ||| ||||| ||||| || ||||||| |||||| |||||||||    
T  24950214 attttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaatt 24950150  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 14514903 - 14514971
Alignment:
Q  184 ttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttata 252  Q
    ||||||||||| ||||| |  ||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  14514903 ttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttata 14514971  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 20975558 - 20975624
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattag 247  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||| ||||| ||||    
T  20975558 attttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgtttaaatttag 20975624  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 554482 - 554546
Alignment:
Q  187 ttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||||||||   ||| ||| ||| |||| |||||||||||||| |||||||||||||||    
T  554482 ttatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagttat 554546  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 18908879 - 18908811
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||||||||| | |||| | ||||||| ||| |||| |||||||||||||| || ||||||||||    
T  18908879 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18908811  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 18913627 - 18913559
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||||||||| | |||| | ||||||| ||| |||| |||||||||||||| || ||||||||||    
T  18913627 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18913559  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 18920835 - 18920767
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 249  Q
    |||||||||||||| | |||| | ||||||| ||| |||| |||||||||||||| || ||||||||||    
T  18920835 attttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagtt 18920767  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 25698507 - 25698562
Alignment:
Q  181 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattg 236  Q
    |||||||||||||||||||||   ||||||| |||||||| ||||||||| |||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggactaaattg 25698562  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 20967699 - 20967749
Alignment:
Q  180 gattttgttatatggcaaatgaagaaatttggggttgaagattcttggact 230  Q
    |||||||||||||||||||||| ||||||| | | |||||| |||||||||    
T  20967699 gattttgttatatggcaaatgacgaaatttagagctgaagagtcttggact 20967749  T

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Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 4745 - 4669
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| |||| ||||||||||| ||  | ||||||||||||    
T  4745 aaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagttat 4669  T

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Target: scaffold0649 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 5430 - 5508
Alignment:
Q  173 ggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| |||||||||||||||||| ||||| |||||| | |||||||| |||||||||   || |||||| ||||||||    
T  5430 ggaaaatgattttgttatatggcagatgaaaaaatttagagttgaagagtcttggactatgttccttaaatttagttat 5508  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 27618485 - 27618561
Alignment:
Q  175 aaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    ||||| |||||||||||||| ||||| |  || | || |||||||| ||||||||||| ||||||||| ||||||||    
T  27618485 aaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagttat 27618561  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 29390288 - 29390356
Alignment:
Q  183 tttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagttat 251  Q
    |||||||||||||| |||| | ||||||| |||||||| ||||| ||| ||||| || || ||||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaattgtttcaatttagttat 29390356  T

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Target: scaffold0354 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 7471 - 7529
Alignment:
Q  189 atatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattag 247  Q
    ||||||||||||||| ||||||| ||||| || ||||||  |||||| |||||||||||    
T  7471 atatggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattag 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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