View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10548_7 (Length: 332)
Name: NF10548_7
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10548_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 80 - 331
Target Start/End: Complemental strand, 10082979 - 10082728
Alignment:
| Q |
80 |
aagtttcttcaatatattaattctttcaaccatagcttttaaattgaagctataaggttaaattttccttataatctcctttctcttcctgtggtcttct |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10082979 |
aagtttcttcaatatattaattctttcaaccatagcttttaaattgaagctataaggttaaattttccttataatctcctttctcttcatgtggtcttct |
10082880 |
T |
|
| Q |
180 |
cactaatgaccacatttatcttttcaagttgttccatgatttagttaagctcttctttattaatgtctttagctctctcatttgagttctctcaagttct |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10082879 |
cactaatgaccacatttatcttttcaagttgttccatgatttagttaagctcttctttattaatgtctttagctctctcatttgagttctctcaagttct |
10082780 |
T |
|
| Q |
280 |
tatggtattctcactttaaggctggaaatttcttgtgcataaaatcgaatat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10082779 |
tatggtattctcactttaaggctggaaatttcttgtgcataaaatcgaatat |
10082728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 196 - 331
Target Start/End: Complemental strand, 10098627 - 10098497
Alignment:
| Q |
196 |
tatcttttcaagttgttccatgatttagttaagctcttctttattaatgtctttagctctctcatttgagttctctcaagttcttatggtattctcactt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
10098627 |
tatcttttcaagttgttccatgatttagttaatctctt-----ttattgtctttagctctatcatttgatttctctcgagttcttatggtattttcactt |
10098533 |
T |
|
| Q |
296 |
taaggctggaaatttcttgtgcataaaatcgaatat |
331 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10098532 |
taaggttggaaatttcttgtgcataaaatcgaatat |
10098497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 10083043 - 10082998
Alignment:
| Q |
14 |
tgttaacaactctattcaccatcactaactgtttcttcaacattag |
59 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10083043 |
tgttaacaactctattcatcatcactaactgtttcttcaacattag |
10082998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 10100892 - 10100832
Alignment:
| Q |
108 |
accatagcttttaaattgaagctataaggttaaattttccttataatctcctttctcttcc |
168 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||| || |||| |||||||||||||| |
|
|
| T |
10100892 |
accatagtatttaaattgaggctataagcttaaatttttctcataacctcctttctcttcc |
10100832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University