View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10548_low_1 (Length: 542)
Name: NF10548_low_1
Description: NF10548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10548_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 236 - 525
Target Start/End: Complemental strand, 4338766 - 4338477
Alignment:
| Q |
236 |
cactctaactctaatattctttctggataaattttatgcattgtcccgccactttggaaatggatctcatataatgcgttgaacccttcatgaaattcat |
335 |
Q |
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| T |
4338766 |
cactctaactctaatattctttctggataaattttatgcattgtcccgccactttggaaatggatctcatataatgcgttgaacccttcatgaaattcat |
4338667 |
T |
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| Q |
336 |
ccaatgaagtgttagagtgagagttgctataacttttcttcgttctatttctatgaatatgttatatcacatgtcaaaacccagtctctctcacagttta |
435 |
Q |
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| T |
4338666 |
ccaatgaagtgttagagtgagagttgctataacttttcttcgttctatttctatgaatatgttatatcacatatcaaaacccagtctctctcacagttta |
4338567 |
T |
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| Q |
436 |
ttgatttggagacctgaaagaaaattaaaggttgaatgcttagtaaaccattgtatgaggaaaactaataacttggcataaagaaatctt |
525 |
Q |
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| T |
4338566 |
ttgatttggagacctgaaagaaaattaaaggttgaatgcttagtaaaccattgtatgaggaaaactaataacttggcataaagaaatctt |
4338477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 431 - 516
Target Start/End: Original strand, 4318475 - 4318561
Alignment:
| Q |
431 |
gtttattgatttggagacctgaaagaaaattaaaggttgaat-gcttagtaaaccattgtatgaggaaaactaataacttggcataa |
516 |
Q |
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| T |
4318475 |
gtttattggtttggagacctgaaagaaaataaaagattgaatggcttagtaaaccactgtatgagaaaaaccaaaaacttagcataa |
4318561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 516
Target Start/End: Complemental strand, 4364435 - 4364340
Alignment:
| Q |
424 |
tctcacagtttattgatttggagacctgaaagaaaattaaaggttgaatg-cttagtaaa--ccattgtatgaggaaaactaataacttggcataa |
516 |
Q |
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| T |
4364435 |
tctcccagtttattgctttgaagacctgaaagaaaattaaagattgaatgtcttagtaaacgccactctatgaggaaaactcaaaacttcgcataa |
4364340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 498
Target Start/End: Complemental strand, 4347993 - 4347914
Alignment:
| Q |
420 |
tctctctcacagtttattgatttggagacctgaaagaaaattaaaggttgaat-gcttagtaaaccattgtatgaggaaa |
498 |
Q |
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| T |
4347993 |
tctctctctcattttattgctttgaagaccagaaagaaaattaaagattaaatggcttagtaaaccactgtttgacgaaa |
4347914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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